MicrobesOnline Operon Predictions for Chlamydophila pneumoniae AR39

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 47587 47588 CP0002 CP0003     TRUE 0.403 71.000 0.086 NA   NA
 47590 47591 CP0005 CP0006     TRUE 0.791 -10.000 0.005 1.000 N NA
 47592 47593 CP0007 CP0008     TRUE 0.989 -13.000 0.542 0.006 Y NA
 47594 47595 CP0009 CP0011     FALSE 0.034 321.000 0.000 1.000 N NA
 47598 47599 CP0014 CP0015     FALSE 0.029 335.000 0.000 NA   NA
 47600 47601 CP0016 CP0017     FALSE 0.222 103.000 0.008 NA   NA
 47601 47602 CP0017 CP0018     TRUE 0.459 112.000 0.833 NA   NA
 47604 47605 CP0020 CP0021     TRUE 0.520 66.000 0.500 NA   NA
 47605 47606 CP0021 CP0022     FALSE 0.278 57.000 0.000 NA   NA
 47607 47608 CP0023 CP0024     TRUE 0.920 7.000 0.009 NA   NA
 47608 47609 CP0024 CP0025     TRUE 0.855 -3.000 0.011 NA   NA
 47610 47611 CP0026 CP0027     FALSE 0.223 110.000 0.004 0.052   NA
 47611 47612 CP0027 CP0028     FALSE 0.036 287.000 0.002 NA   NA
 47612 47613 CP0028 CP0029     TRUE 0.960 0.000 1.000 NA   NA
 47613 47614 CP0029 CP0030     FALSE 0.207 105.000 0.007 NA   NA
 47614 47615 CP0030 CP0031     TRUE 0.993 4.000 0.110 0.006 Y NA
 47616 47617 CP0032 CP0033     FALSE 0.030 367.000 0.000 1.000   NA
 47617 47618 CP0033 CP0034     TRUE 0.958 14.000 0.146 NA   NA
 47618 47619 CP0034 CP0035     TRUE 0.615 47.000 0.171 NA   NA
 47619 47620 CP0035 CP0036     TRUE 0.962 22.000 0.857 NA   NA
 47620 47621 CP0036 CP0037     TRUE 0.865 19.000 0.000 NA   NA
 47621 47622 CP0037 CP0038     TRUE 0.613 34.000 0.000 NA   NA
 47622 47623 CP0038 CP0039     TRUE 0.961 2.000 0.857 NA   NA
 47623 47624 CP0039 CP0040     TRUE 0.971 18.000 0.875 NA   NA
 47624 47625 CP0040 CP0041     TRUE 0.964 4.000 0.750 NA   NA
 47625 47626 CP0041 CP0042     TRUE 0.970 10.000 0.600 NA   NA
 47626 47627 CP0042 CP0043     TRUE 0.970 16.000 0.583 1.000 N NA
 47627 47628 CP0043 CP0044     TRUE 0.919 -3.000 0.208 1.000 N NA
 47628 2132614 CP0044 CPt03   tRNA-Thr-2 FALSE 0.094 146.000 0.000 NA   NA
 47629 47630 CP0045 CP0046     TRUE 0.936 -13.000 0.848 1.000   NA
 47630 2132615 CP0046 CPt04   tRNA-Lys-1 FALSE 0.171 103.000 0.000 NA   NA
 2132615 2132616 CPt04 CPt05 tRNA-Lys-1 tRNA-Glu-1 TRUE 0.789 26.000 0.000 NA   NA
 2132616 47631 CPt05 CP0047 tRNA-Glu-1 frr FALSE 0.183 98.000 0.000 NA   NA
 47631 47632 CP0047 CP0048 frr ospE2 TRUE 0.915 -22.000 0.626 1.000 N NA
 47632 47633 CP0048 CP0049 ospE2 tsf TRUE 0.967 8.000 0.416 1.000 N NA
 47633 47634 CP0049 CP0050 tsf   TRUE 0.993 0.000 0.748 1.000 Y NA
 47634 2132617 CP0050 CPt06   tRNA-Gly-2 FALSE 0.188 89.000 0.000 NA   NA
 2132617 47635 CPt06 CP0051 tRNA-Gly-2   FALSE 0.048 225.000 0.000 NA   NA
 47636 47637 CP0052 CP0053     TRUE 0.474 71.000 0.400 NA   NA
 47637 47638 CP0053 CP0054     FALSE 0.029 325.000 0.000 NA   NA
 47638 47639 CP0054 CP0055     TRUE 0.995 6.000 0.466 1.000 Y NA
 47639 47640 CP0055 CP0056     TRUE 0.992 2.000 0.482 1.000 Y NA
 47640 47641 CP0056 CP0057     TRUE 0.883 29.000 0.193 1.000 N NA
 47642 47643 CP0058 CP0059     FALSE 0.255 165.000 0.714 NA   NA
 47647 47648 CP0063 CP0064     FALSE 0.210 72.000 0.000 NA   NA
 47648 47649 CP0064 CP0065     TRUE 0.988 -10.000 0.250 0.003 Y NA
 47650 47651 CP0066 CP0067     TRUE 0.976 7.000 0.937 NA   NA
 47651 47652 CP0067 CP0068     TRUE 0.596 38.000 0.005 1.000   NA
 47652 47653 CP0068 CP0069     FALSE 0.025 402.000 0.000 NA   NA
 47653 47654 CP0069 CP0070     FALSE 0.035 278.000 0.000 NA   NA
 47654 47655 CP0070 CP0071     TRUE 0.819 36.000 0.500 NA   NA
 47655 47656 CP0071 CP0072     TRUE 0.434 129.000 1.000 NA   NA
 47656 47657 CP0072 CP0073     FALSE 0.267 97.000 0.012 NA   NA
 47658 47659 CP0074 CP0075     FALSE 0.137 236.000 0.455 NA   NA
 47661 47662 CP0077 CP0078     TRUE 0.923 -31.000 0.875 NA   NA
 47662 47663 CP0078 CP0079     TRUE 0.975 14.000 0.750 NA   NA
 47665 47666 CP0081 CP0082     TRUE 0.898 20.000 0.007 1.000 N NA
 47667 47668 CP0083 CP0084   hisS FALSE 0.027 364.000 0.000 NA   NA
 47668 47669 CP0084 CP0085 hisS   TRUE 0.975 -25.000 0.009 0.072 Y NA
 47669 47670 CP0085 CP0086     FALSE 0.277 69.000 0.006 1.000 N NA
 47670 47671 CP0086 CP0087     TRUE 0.872 -3.000 0.011 1.000 N NA
 47672 2132618 CP0088 CPt07   tRNA-Leu-1 TRUE 0.380 47.000 0.000 NA   NA
 47673 47674 CP0089 CP0090     TRUE 0.794 -21.000 0.010 NA   NA
 47676 47677 CP0092 CP0093     FALSE 0.248 131.000 0.072 NA N NA
 47677 47678 CP0093 CP0094     TRUE 0.953 10.000 0.072 NA N NA
 47678 47679 CP0094 CP0095   lpxC TRUE 0.992 15.000 0.012 1.000 Y NA
 47679 47680 CP0095 CP0096 lpxC fabZ TRUE 0.940 12.000 0.012 1.000 N NA
 47680 47681 CP0096 CP0097 fabZ   TRUE 0.956 13.000 0.048 1.000 N NA
 47681 47682 CP0097 CP0098     TRUE 0.812 -10.000 0.007 1.000 N NA
 47682 47683 CP0098 CP0099     FALSE 0.190 104.000 0.006 NA   NA
 47683 47684 CP0099 CP0100     FALSE 0.033 289.000 0.000 NA   NA
 47684 47685 CP0100 CP0101     TRUE 0.970 33.000 0.020 0.055 Y NA
 47685 47686 CP0101 CP0102     TRUE 0.992 17.000 0.013 0.055 Y NA
 47686 47687 CP0102 CP0103     TRUE 0.995 22.000 0.849 0.050 Y NA
 47687 47688 CP0103 CP0104   rpsS TRUE 0.996 6.000 0.820 0.076 Y NA
 47688 47689 CP0104 CP0105 rpsS rplV TRUE 0.996 19.000 0.769 0.076 Y NA
 47689 47690 CP0105 CP0106 rplV rpsC TRUE 0.996 16.000 0.719 0.076 Y NA
 47690 47691 CP0106 CP0107 rpsC   TRUE 0.990 29.000 0.828 0.076 Y NA
 47691 47692 CP0107 CP0108   rpmC TRUE 0.995 3.000 0.802 0.055 Y NA
 47692 47693 CP0108 CP0109 rpmC   TRUE 0.992 -7.000 0.828 0.055 Y NA
 47693 47694 CP0109 CP0110     TRUE 0.994 23.000 0.791 0.076 Y NA
 47694 47695 CP0110 CP0111     TRUE 0.997 14.000 0.810 0.076 Y NA
 47695 47696 CP0111 CP0112     TRUE 0.995 2.000 0.758 0.055 Y NA
 47696 47697 CP0112 CP0113     TRUE 0.993 18.000 0.059 0.055 Y NA
 47697 47698 CP0113 CP0114     TRUE 0.992 27.000 0.808 0.055 Y NA
 47698 47699 CP0114 CP0115     TRUE 0.997 11.000 0.815 0.055 Y NA
 47699 47700 CP0115 CP0116   rpsE TRUE 0.996 18.000 0.814 0.076 Y NA
 47700 47701 CP0116 CP0117 rpsE   TRUE 0.987 -7.000 0.148 0.076 Y NA
 47701 47702 CP0117 CP0118   secY TRUE 0.951 25.000 0.730 1.000 N NA
 47702 47703 CP0118 CP0119 secY   TRUE 0.415 56.000 0.011 1.000 N NA
 47703 47704 CP0119 CP0120     TRUE 0.995 22.000 0.810 0.055 Y NA
 47704 47705 CP0120 CP0121     TRUE 0.887 -30.000 0.308 1.000 N NA
 47705 47706 CP0121 CP0122     TRUE 0.977 7.000 0.873 1.000 N NA
 47706 47707 CP0122 CP0123     TRUE 0.547 42.000 0.006 1.000 N NA
 47707 47708 CP0123 CP0124     TRUE 0.955 15.000 0.128 NA   NA
 47708 2132619 CP0124 CPt08   tRNA-Leu-2 FALSE 0.060 189.000 0.000 NA   NA
 2132619 47709 CPt08 CP0125 tRNA-Leu-2   FALSE 0.115 137.000 0.000 NA   NA
 47709 47710 CP0125 CP0126   ruvC FALSE 0.102 143.000 0.000 NA   NA
 47710 47711 CP0126 CP0127 ruvC ruvA TRUE 0.993 2.000 0.451 0.017 Y NA
 47711 47712 CP0127 CP0128 ruvA ndk FALSE 0.263 72.000 0.006 1.000 N NA
 47713 47714 CP0129 CP0130     TRUE 0.812 -13.000 0.008 1.000 N NA
 47714 47715 CP0130 CP0131     FALSE 0.032 344.000 0.000 1.000 N NA
 2132620 47716 CPt09 CP0132 tRNA-Ser-1   FALSE 0.051 217.000 0.000 NA   NA
 47716 47717 CP0132 CP0133     FALSE 0.065 229.000 0.000 0.062 N NA
 47717 47718 CP0133 CP0134     FALSE 0.212 124.000 0.011 1.000 N NA
 47718 47719 CP0134 CP0135     TRUE 0.859 24.000 0.006 1.000 N NA
 47719 47720 CP0135 CP0136   coaE TRUE 0.897 -6.000 0.068 1.000 N NA
 47720 47721 CP0136 CP0137 coaE rho TRUE 0.875 -3.000 0.013 1.000 N NA
 47723 47724 CP0139 CP0140     FALSE 0.239 118.000 0.012 1.000 N NA
 47724 47725 CP0140 CP0141     FALSE 0.286 126.000 0.070 1.000   NA
 47725 47726 CP0141 CP0142     TRUE 0.855 -3.000 0.008 1.000   NA
 47726 47727 CP0142 CP0143     FALSE 0.070 202.000 0.005 1.000 N NA
 47729 47730 CP0145 CP0146     TRUE 0.362 48.000 0.000 NA   NA
 47730 47731 CP0146 CP0147     FALSE 0.077 163.000 0.000 NA   NA
 47731 47732 CP0147 CP0148     FALSE 0.048 226.000 0.000 NA   NA
 47732 47733 CP0148 CP0149     TRUE 0.839 22.000 0.000 NA   NA
 47733 47734 CP0149 CP0150     TRUE 0.986 -18.000 0.318 0.029 Y NA
 47734 47735 CP0150 CP0151     TRUE 0.993 1.000 0.400 0.029 Y NA
 47736 47737 CP0152 CP0153     TRUE 0.948 10.000 0.038 NA   NA
 47737 47738 CP0153 CP0154   pheT TRUE 0.825 -3.000 0.006 NA   NA
 47740 47741 CP0156 CP0157     FALSE 0.177 121.000 0.007 NA   NA
 2132621 47742 CPt10 CP0158 tRNA-Leu-3   FALSE 0.233 66.000 0.000 NA   NA
 47743 47744 CP0159 CP0160 recO   TRUE 0.916 11.000 0.007 NA   NA
 47744 47745 CP0160 CP0161     TRUE 0.702 -43.000 0.000 NA   NA
 47745 2132622 CP0161 CPt11   tRNA-Arg-2 FALSE 0.168 104.000 0.000 NA   NA
 2132622 47746 CPt11 CP0162 tRNA-Arg-2   FALSE 0.195 78.000 0.000 NA   NA
 47748 47749 CP0164 CP0165     TRUE 0.845 -43.000 0.057 NA   NA
 47749 2132623 CP0165 CPt12   tRNA-Leu-4 FALSE 0.192 82.000 0.000 NA   NA
 2132623 47750 CPt12 CP0166 tRNA-Leu-4   FALSE 0.286 56.000 0.000 NA   NA
 47752 47753 CP0168 CP0169   ispD TRUE 0.851 -3.000 0.007 1.000 N NA
 47753 47754 CP0169 CP0170 ispD   TRUE 0.844 -7.000 0.010 1.000   NA
 47754 47755 CP0170 CP0171     FALSE 0.122 248.000 0.316 1.000   NA
 47756 10729965 CP0172 CP0173     FALSE 0.124 130.000 0.000 NA   NA
 10729965 47757 CP0173 CP0174     TRUE 0.793 -3.000 0.000 NA   NA
 47757 47758 CP0174 CP0175     TRUE 0.823 34.000 0.200 1.000   NA
 47758 47759 CP0175 CP0176     TRUE 0.755 -13.000 0.003 NA   NA
 47762 47763 CP0179 CP0180     TRUE 0.902 5.000 0.006 1.000 N NA
 47763 47764 CP0180 CP0181     TRUE 0.857 -3.000 0.008 1.000 N NA
 47764 47765 CP0181 CP0182     TRUE 0.857 -3.000 0.008 1.000 N NA
 47765 47766 CP0182 CP0183     TRUE 0.992 1.000 0.400 1.000 Y NA
 47766 47767 CP0183 CP0184     FALSE 0.299 55.000 0.000 NA   NA
 47768 47769 CP0185 CP0186     FALSE 0.064 180.000 0.000 NA   NA
 47769 47770 CP0186 CP0187     FALSE 0.262 86.000 0.007 1.000   NA
 47770 47771 CP0187 CP0188     FALSE 0.040 254.000 0.000 NA   NA
 47771 47772 CP0188 CP0189     FALSE 0.024 511.000 0.000 NA   NA
 47772 47773 CP0189 CP0190   gltX FALSE 0.045 256.000 0.000 1.000   NA
 47775 47776 CP0192 CP0193   omcA FALSE 0.196 77.000 0.000 NA   NA
 47778 47779 CP0195 CP0196 omcB srp FALSE 0.095 279.000 0.200 1.000   NA
 47780 47781 CP0197 CP0198     FALSE 0.148 154.000 0.025 NA   NA
 47782 47783 CP0199 CP0200     FALSE 0.049 222.000 0.000 NA   NA
 47783 47784 CP0200 CP0201     TRUE 0.920 48.000 0.029 0.011 Y NA
 47784 47785 CP0201 CP0202     TRUE 0.956 34.000 0.008 1.000 Y NA
 47785 47786 CP0202 CP0203     TRUE 0.991 8.000 0.007 1.000 Y NA
 47786 47787 CP0203 CP0204     TRUE 0.882 21.000 0.006 1.000 N NA
 2132624 47789 CPt13 CP0206 tRNA-Phe-1   FALSE 0.099 144.000 0.000 NA   NA
 47789 47790 CP0206 CP0207     TRUE 0.993 25.000 0.667 0.053 Y NA
 47790 47791 CP0207 CP0208   obgE TRUE 0.421 101.000 0.335 1.000   NA
 47792 47793 CP0209 CP0210     TRUE 0.987 -15.000 0.616 1.000 Y NA
 47793 47794 CP0210 CP0211     TRUE 0.990 -3.000 0.509 1.000 Y NA
 47795 47796 CP0212 CP0213     TRUE 0.416 119.000 0.400 0.028   NA
 47796 47797 CP0213 CP0214     FALSE 0.059 191.000 0.000 NA   NA
 47797 47798 CP0214 CP0215     TRUE 0.970 20.000 1.000 NA   NA
 47798 47799 CP0215 CP0216     FALSE 0.274 139.000 0.333 NA   NA
 47799 47800 CP0216 CP0217   lspA TRUE 0.649 46.000 0.038 0.071 N NA
 47800 47801 CP0217 CP0218 lspA   TRUE 0.947 6.000 0.038 1.000 N NA
 47801 47802 CP0218 CP0219     TRUE 0.875 1.000 0.009 NA N NA
 47803 47804 CP0220 CP0221     TRUE 0.886 3.000 0.006 1.000   NA
 47804 47805 CP0221 CP0222     TRUE 0.896 -12.000 0.213 1.000   NA
 47805 47806 CP0222 CP0223     FALSE 0.073 198.000 0.006 1.000 N NA
 47806 47807 CP0223 CP0224     TRUE 0.893 0.000 0.013 1.000 N NA
 47807 47808 CP0224 CP0225     TRUE 0.996 14.000 0.714 1.000 Y NA
 47808 47809 CP0225 CP0226     TRUE 0.946 27.000 0.857 1.000 N NA
 47809 47810 CP0226 CP0227     FALSE 0.118 135.000 0.000 NA   NA
 47811 47812 CP0228 CP0229     FALSE 0.029 340.000 0.000 NA   NA
 47812 47813 CP0229 CP0230     TRUE 0.714 48.000 0.750 NA   NA
 47813 47814 CP0230 CP0231     TRUE 0.473 65.000 0.273 NA   NA
 47815 47816 CP0232 CP0233     TRUE 0.938 20.000 0.051 1.000 N NA
 47816 47817 CP0233 CP0234   dapF TRUE 0.758 -31.000 0.006 1.000 N NA
 47817 47818 CP0234 CP0235 dapF   FALSE 0.234 98.000 0.008 NA   NA
 47818 47819 CP0235 CP0236     FALSE 0.057 198.000 0.000 NA   NA
 47819 47820 CP0236 CP0237     TRUE 0.717 -22.000 0.000 NA   NA
 47821 47822 CP0238 CP0239     TRUE 0.756 -52.000 0.008 NA   NA
 47822 47823 CP0239 CP0240     TRUE 0.869 -27.000 0.205 NA   NA
 47823 47824 CP0240 CP0241     TRUE 0.825 -28.000 0.027 NA   NA
 47824 47825 CP0241 CP0242     TRUE 0.934 27.000 0.714 NA   NA
 47825 47826 CP0242 CP0243     TRUE 0.557 62.000 0.571 NA   NA
 47826 47827 CP0243 CP0244     FALSE 0.112 165.000 0.011 NA   NA
 47827 47828 CP0244 CP0245     TRUE 0.933 2.000 0.222 NA   NA
 47828 47829 CP0245 CP0246     TRUE 0.698 32.000 0.006 NA   NA
 47829 47830 CP0246 CP0247     FALSE 0.031 299.000 0.000 NA   NA
 47830 47831 CP0247 CP0248     TRUE 0.780 -48.000 0.011 NA   NA
 47831 47832 CP0248 CP0249     TRUE 0.868 2.000 0.005 1.000 N NA
 47834 47835 CP0251 CP0252 dnaK   TRUE 0.983 30.000 0.224 0.015 Y NA
 47835 47836 CP0252 CP0253     TRUE 0.924 -3.000 0.286 1.000 N NA
 47836 47837 CP0253 CP0254     FALSE 0.320 65.000 0.007 1.000 N NA
 47838 47839 CP0255 CP0256     FALSE 0.240 168.000 0.667 NA   NA
 47839 47840 CP0256 CP0257     TRUE 0.827 -7.000 0.010 NA   NA
 47841 47842 CP0258 CP0259     TRUE 0.891 -3.000 0.037 NA   NA
 47843 47844 CP0260 CP0261     FALSE 0.110 139.000 0.000 NA   NA
 47848 47849 CP0265 CP0266     TRUE 0.784 -48.000 0.011 NA   NA
 47849 47850 CP0266 CP0267     TRUE 0.852 24.000 0.005 1.000 N NA
 47850 47851 CP0267 CP0268     FALSE 0.029 373.000 0.000 1.000 N NA
 47852 47853 CP0269 CP0270     FALSE 0.053 211.000 0.000 NA   NA
 47853 47854 CP0270 CP0271     TRUE 0.948 3.000 0.333 1.000   NA
 47855 10729966 CP0272 CP0273     TRUE 0.898 12.000 0.000 NA   NA
 10729966 47856 CP0273 CP0274     TRUE 0.639 33.000 0.000 NA   NA
 47856 47857 CP0274 CP0275     FALSE 0.066 222.000 0.008 NA   NA
 47857 47858 CP0275 CP0276     TRUE 0.819 -12.000 0.008 1.000   NA
 47858 47859 CP0276 CP0277     FALSE 0.214 101.000 0.005 1.000   NA
 47859 47860 CP0277 CP0278     TRUE 0.852 -3.000 0.010 NA   NA
 47860 47861 CP0278 CP0279     TRUE 0.972 11.000 0.636 NA   NA
 47861 47862 CP0279 CP0280     TRUE 0.373 109.000 0.364 NA   NA
 47862 47863 CP0280 CP0281     FALSE 0.053 211.000 0.000 NA   NA
 47863 47864 CP0281 CP0282     FALSE 0.077 162.000 0.000 NA   NA
 47865 10729967 CP0283 CP0284     TRUE 0.721 29.000 0.000 NA   NA
 10729967 47866 CP0284 CP0285     FALSE 0.058 195.000 0.000 NA   NA
 47866 47867 CP0285 CP0286     TRUE 0.622 39.000 0.000 0.026   NA
 47868 47869 CP0287 CP0288     TRUE 0.789 26.000 0.000 NA   NA
 47869 47870 CP0288 CP0289     TRUE 0.883 6.000 0.000 NA   NA
 47870 47871 CP0289 CP0290     FALSE 0.116 136.000 0.000 NA   NA
 47871 47872 CP0290 CP0291     FALSE 0.025 396.000 0.000 NA   NA
 47872 47873 CP0291 CP0292     TRUE 0.828 1.000 0.000 NA   NA
 47873 47874 CP0292 CP0293     TRUE 0.732 -16.000 0.000 NA   NA
 47874 47875 CP0293 CP0294     FALSE 0.032 296.000 0.000 NA   NA
 47875 47876 CP0294 CP0295     FALSE 0.026 368.000 0.000 NA   NA
 47876 47877 CP0295 CP0296     TRUE 0.850 21.000 0.000 NA   NA
 47877 47878 CP0296 CP0297     FALSE 0.031 301.000 0.000 NA   NA
 47879 47880 CP0298 CP0299     TRUE 0.957 27.000 1.000 0.026   NA
 47880 47881 CP0299 CP0300     FALSE 0.142 120.000 0.000 NA   NA
 47881 47882 CP0300 CP0301     FALSE 0.188 90.000 0.000 NA   NA
 47882 47883 CP0301 CP0302     FALSE 0.057 258.000 0.000 0.026   NA
 47887 47888 CP0306 CP0307     FALSE 0.126 150.000 0.000 0.026   NA
 47888 47889 CP0307 CP0308     TRUE 0.538 44.000 0.000 0.026   NA
 47889 47890 CP0308 CP0309     FALSE 0.054 262.000 0.000 0.026   NA
 47890 47891 CP0309 CP0310     FALSE 0.031 305.000 0.000 NA   NA
 47891 47892 CP0310 CP0311     FALSE 0.199 198.000 0.667 NA   NA
 47892 47893 CP0311 CP0312     FALSE 0.218 172.000 0.571 NA   NA
 47893 47894 CP0312 CP0313     FALSE 0.091 148.000 0.000 NA   NA
 47894 47895 CP0313 CP0314     TRUE 0.944 25.000 0.667 NA   NA
 47898 47899 CP0317 CP0318     TRUE 0.913 -3.000 0.032 0.027 N NA
 47899 47900 CP0318 CP0319     TRUE 0.945 10.000 0.032 NA   NA
 47900 47901 CP0319 CP0320     TRUE 0.957 0.000 0.857 NA   NA
 47901 47902 CP0320 CP0321     TRUE 0.413 110.000 0.571 NA   NA
 47902 47903 CP0321 CP0322     TRUE 0.742 28.000 0.000 NA   NA
 47904 47905 CP0323 CP0324     TRUE 0.992 4.000 0.034 0.008 Y NA
 47905 47906 CP0324 CP0325     TRUE 0.988 -3.000 0.034 0.008 Y NA
 47906 47907 CP0325 CP0326     TRUE 0.993 4.000 0.093 0.003 Y NA
 47909 47910 CP0328 CP0329   dnaA TRUE 0.905 16.000 0.006 NA N NA
 47910 47911 CP0329 CP0330 dnaA   FALSE 0.032 342.000 0.000 1.000   NA
 47911 47912 CP0330 CP0331     TRUE 0.946 4.000 0.286 NA   NA
 47912 47913 CP0331 CP0332     FALSE 0.163 107.000 0.000 NA   NA
 47914 47915 CP0333 CP0334 mraW   TRUE 0.835 -3.000 0.007 NA   NA
 47915 47916 CP0334 CP0335     TRUE 0.878 -13.000 0.135 NA   NA
 47916 47917 CP0335 CP0336   murE FALSE 0.290 473.000 0.022 1.000 Y NA
 47917 47918 CP0336 CP0337 murE   TRUE 0.971 -85.000 0.014 1.000 Y NA
 47919 47920 CP0338 CP0339     FALSE 0.295 122.000 0.182 NA   NA
 47920 47921 CP0339 CP0340     FALSE 0.262 75.000 0.008 NA   NA
 47921 47922 CP0340 CP0341     TRUE 0.799 -34.000 0.010 1.000 N NA
 47923 47924 CP0342 CP0343     TRUE 0.717 -22.000 0.000 NA   NA
 47924 47925 CP0343 CP0344     TRUE 0.885 -3.000 0.031 NA   NA
 47925 47926 CP0344 CP0345     TRUE 0.879 -7.000 0.050 NA   NA
 47926 47927 CP0345 CP0346     TRUE 0.355 61.000 0.012 NA   NA
 47928 47929 CP0347 CP0348     TRUE 0.735 -15.000 0.000 NA   NA
 47931 47932 CP0350 CP0351     FALSE 0.198 76.000 0.000 NA   NA
 47933 47934 CP0353 CP0354     TRUE 0.841 1.000 0.005 NA   NA
 47935 47936 CP0355 CP0356     TRUE 0.968 10.000 0.500 NA   NA
 47936 47937 CP0356 CP0357     FALSE 0.067 176.000 0.000 NA   NA
 47938 47939 CP0358 CP0359     TRUE 0.908 25.000 0.041 1.000 N NA
 47940 47941 CP0360 CP0361     TRUE 0.922 -7.000 0.545 NA   NA
 47941 47942 CP0361 CP0362     TRUE 0.964 10.000 0.364 NA   NA
 47942 47943 CP0362 CP0363     TRUE 0.857 -7.000 0.021 NA   NA
 47944 47945 CP0364 CP0365     FALSE 0.027 363.000 0.000 NA   NA
 47945 47946 CP0365 CP0366     TRUE 0.851 -3.000 0.007 1.000   NA
 47948 47949 CP0368 CP0369     FALSE 0.079 171.000 0.000 1.000   NA
 47949 47950 CP0369 CP0370     TRUE 0.884 25.000 0.013 1.000 N NA
 47950 47951 CP0370 CP0371     FALSE 0.184 142.000 0.017 1.000   NA
 47951 47952 CP0371 CP0372     FALSE 0.119 166.000 0.006 0.049   NA
 47952 47953 CP0372 CP0373     TRUE 0.852 -3.000 0.007 1.000   NA
 47956 47957 CP0376 CP0377     TRUE 0.757 -73.000 0.008 NA   NA
 47958 47959 CP0378 CP0379     TRUE 0.994 4.000 0.667 1.000 Y NA
 47960 47961 CP0380 CP0381     FALSE 0.044 236.000 0.000 NA   NA
 47961 47962 CP0381 CP0382     FALSE 0.079 157.000 0.000 NA   NA
 47962 47963 CP0382 CP0383     TRUE 0.849 -3.000 0.009 NA   NA
 47963 47964 CP0383 CP0384     FALSE 0.047 229.000 0.000 NA   NA
 47964 47965 CP0384 CP0385     TRUE 0.509 40.000 0.000 NA   NA
 47965 47966 CP0385 CP0386     FALSE 0.063 181.000 0.000 NA   NA
 47966 47967 CP0386 CP0387     FALSE 0.045 232.000 0.000 NA   NA
 47967 47968 CP0387 CP0388     FALSE 0.045 235.000 0.000 NA   NA
 47968 47969 CP0388 CP0389     FALSE 0.151 115.000 0.000 NA   NA
 47969 47970 CP0389 CP0389.1     TRUE 0.742 28.000 0.000 NA   NA
 47970 47971 CP0389.1 CP0390     TRUE 0.696 -49.000 0.000 NA   NA
 47971 47972 CP0390 CP0391     FALSE 0.023 659.000 0.000 NA   NA
 47972 47973 CP0391 CP0392     FALSE 0.025 429.000 0.000 NA   NA
 47973 47974 CP0392 CP0393     FALSE 0.036 272.000 0.000 NA   NA
 47974 2132627 CP0393 CPt16   tRNA-Pro-2 TRUE 0.437 44.000 0.000 NA   NA
 47975 47976 CP0394 CP0395     FALSE 0.273 115.000 0.025 1.000 N NA
 47978 47979 CP0397 CP0398     TRUE 0.914 21.000 0.014 1.000 N NA
 47981 47982 CP0400 CP0401     FALSE 0.038 258.000 0.000 NA   NA
 47982 47983 CP0401 CP0402     TRUE 0.888 7.000 0.000 NA   NA
 47983 47984 CP0402 CP0403     TRUE 0.613 34.000 0.000 NA   NA
 47984 47985 CP0403 CP0404     FALSE 0.257 61.000 0.000 NA   NA
 47986 47987 CP0405 CP0406     TRUE 0.725 -19.000 0.000 NA   NA
 47987 47988 CP0406 CP0407     FALSE 0.266 60.000 0.000 NA   NA
 47988 47989 CP0407 CP0408     FALSE 0.147 118.000 0.000 NA   NA
 47989 47990 CP0408 CP0409     FALSE 0.056 201.000 0.000 NA   NA
 47990 47991 CP0409 CP0410     FALSE 0.072 168.000 0.000 NA   NA
 47992 47993 CP0411 CP0412     TRUE 0.990 -16.000 0.898 1.000 Y NA
 47993 47994 CP0412 CP0413     TRUE 0.988 -6.000 0.432 1.000 Y NA
 47994 47995 CP0413 CP0414     TRUE 0.993 0.000 0.443 0.006 Y NA
 47995 47996 CP0414 CP0415     FALSE 0.189 129.000 0.008 1.000 N NA
 47996 47997 CP0415 CP0416     TRUE 0.973 13.000 0.568 1.000   NA
 47998 10729969 CP0417 CP0418     FALSE 0.135 124.000 0.000 NA   NA
 10729969 47999 CP0418 CP0419     TRUE 0.479 42.000 0.000 NA   NA
 48000 48001 CP0420 CP0421     TRUE 0.696 30.000 0.000 NA   NA
 48002 48003 CP0422 CP0423     TRUE 0.976 -27.000 0.025 1.000 Y NA
 48003 48004 CP0423 CP0424     TRUE 0.803 -9.000 0.007 NA   NA
 48005 48006 CP0425 CP0426     FALSE 0.027 360.000 0.000 NA   NA
 48006 48007 CP0426 CP0427     TRUE 0.962 23.000 1.000 NA   NA
 48008 48009 CP0428 CP0429     FALSE 0.329 93.000 0.038 NA N NA
 48009 48010 CP0429 CP0430     TRUE 0.786 27.000 0.005 NA N NA
 48010 48011 CP0430 CP0431     FALSE 0.064 217.000 0.005 1.000 N NA
 48011 48012 CP0431 CP0432     TRUE 0.941 -3.000 0.600 1.000   NA
 48012 48013 CP0432 CP0433     TRUE 0.965 17.000 0.240 0.008   NA
 48013 48014 CP0433 CP0434     TRUE 0.883 29.000 0.188 1.000   NA
 48014 48015 CP0434 CP0435     TRUE 0.991 0.000 0.219 0.013 Y NA
 48017 48018 CP0437 CP0438   truB TRUE 0.892 -22.000 0.308 1.000 N NA
 48018 48019 CP0438 CP0439 truB   TRUE 0.931 46.000 0.111 1.000 Y NA
 48019 48020 CP0439 CP0440   infB TRUE 0.984 -49.000 0.530 1.000 Y NA
 48020 48021 CP0440 CP0441 infB   TRUE 0.888 -43.000 0.342 1.000 N NA
 48021 48022 CP0441 CP0442     FALSE 0.261 101.000 0.006 0.041 N NA
 48022 48023 CP0442 CP0443     FALSE 0.024 444.000 0.000 NA   NA
 48025 48026 CP0445 CP0446     TRUE 0.948 11.000 0.036 NA   NA
 48027 48028 CP0447 CP0448     FALSE 0.148 139.000 0.006 1.000 N NA
 48028 48029 CP0448 CP0449   dnaA TRUE 0.550 72.000 0.714 1.000 N NA
 48032 48033 CP0452 CP0453     TRUE 0.993 5.000 0.254 1.000 Y NA
 48033 48034 CP0453 CP0454     TRUE 0.990 -7.000 0.456 0.002 Y NA
 48036 48037 CP0456 CP0457 lpxD   TRUE 0.988 22.000 0.018 1.000 Y NA
 48037 48038 CP0457 CP0458     TRUE 0.826 95.000 0.175 1.000 Y NA
 48038 48039 CP0458 CP0459   recR FALSE 0.034 359.000 0.003 1.000 N NA
 48040 48041 CP0460 CP0461     TRUE 0.992 17.000 0.009 0.012 Y NA
 48041 48042 CP0461 CP0462   fabG TRUE 0.993 6.000 0.019 0.012 Y NA
 48042 48043 CP0462 CP0463 fabG acpP TRUE 0.573 156.000 0.007 0.012 Y NA
 48044 48045 CP0464 CP0465     FALSE 0.067 366.000 0.182 NA   NA
 48045 48046 CP0465 CP0466     TRUE 0.431 110.000 0.667 NA   NA
 48046 48047 CP0466 CP0467     TRUE 0.915 31.000 1.000 NA   NA
 48047 48048 CP0467 CP0468     FALSE 0.254 141.000 0.273 NA   NA
 48048 48049 CP0468 CP0469     TRUE 0.731 43.000 0.273 1.000   NA
 48050 48051 CP0470 CP0471     FALSE 0.028 347.000 0.000 NA   NA
 48051 48052 CP0471 CP0472     TRUE 0.890 27.000 0.044 1.000   NA
 48052 48053 CP0472 CP0473     TRUE 0.492 52.000 0.033 NA   NA
 48053 48054 CP0473 CP0474     TRUE 0.845 3.000 0.000 NA   NA
 48054 10729970 CP0474 CP0475     FALSE 0.331 51.000 0.000 NA   NA
 48055 48056 CP0476 CP0477     TRUE 0.972 20.000 1.000 1.000 N NA
 48057 48058 CP0478 CP0479     TRUE 0.994 10.000 0.089 1.000 Y NA
 48058 48059 CP0479 CP0480     TRUE 0.991 -3.000 0.667 NA Y NA
 48059 48060 CP0480 CP0481     FALSE 0.092 147.000 0.000 NA   NA
 48060 48061 CP0481 CP0482     TRUE 0.888 16.000 0.000 NA   NA
 48061 48062 CP0482 CP0483     FALSE 0.181 99.000 0.000 NA   NA
 48062 48063 CP0483 CP0484     TRUE 0.922 4.000 0.028 NA   NA
 48063 48064 CP0484 CP0485     TRUE 0.995 16.000 0.306 0.005 Y NA
 48064 48065 CP0485 CP0486   tdk TRUE 0.909 5.000 0.007 1.000 N NA
 48065 48066 CP0486 CP0487 tdk   TRUE 0.905 -9.000 0.254 1.000 N NA
 48068 48069 CP0489 CP0490     TRUE 0.932 15.000 0.012 NA N NA
 48070 48071 CP0491 CP0492     TRUE 0.883 6.000 0.000 NA   NA
 48071 48072 CP0492 CP0493     TRUE 0.839 22.000 0.000 NA   NA
 48072 48073 CP0493 CP0494     FALSE 0.171 103.000 0.000 NA   NA
 48073 48074 CP0494 CP0495     TRUE 0.479 42.000 0.000 NA   NA
 48075 48076 CP0496 CP0497     TRUE 0.985 -3.000 0.029 1.000 Y NA
 48077 2132628 CP0498 CPt17   tRNA-Asp-1 TRUE 0.805 25.000 0.000 NA   NA
 2132628 2132629 CPt17 CPt18 tRNA-Asp-1 tRNA-Val-1 TRUE 0.859 4.000 0.000 NA   NA
 2132629 48078 CPt18 CP0499 tRNA-Val-1 surE FALSE 0.110 139.000 0.000 NA   NA
 48078 48079 CP0499 CP0500 surE   TRUE 0.450 55.000 0.015 1.000   NA
 48080 2132630 CP0501 CPt19   tRNA-Thr-1 FALSE 0.229 68.000 0.000 NA   NA
 2132630 2132631 CPt19 CPt20 tRNA-Thr-1 tRNA-Tyr-1 TRUE 0.883 6.000 0.000 NA   NA
 10729971 48082 CP0503 CP0504     TRUE 0.845 3.000 0.000 NA   NA
 48082 48083 CP0504 CP0505     TRUE 0.960 0.000 1.000 NA   NA
 48083 48084 CP0505 CP0506     FALSE 0.046 230.000 0.000 NA   NA
 48084 48085 CP0506 CP0507     TRUE 0.627 64.000 1.000 NA   NA
 48085 10729972 CP0507 CP0508     TRUE 0.820 0.000 0.000 NA   NA
 48087 48088 CP0511 CP0512     FALSE 0.327 58.000 0.006 1.000   NA
 48088 48089 CP0512 CP0513     TRUE 0.993 3.000 0.545 1.000 Y NA
 48089 48090 CP0513 CP0514     TRUE 0.524 39.000 0.000 NA   NA
 48090 48091 CP0514 CP0515     TRUE 0.437 44.000 0.000 NA   NA
 48091 48092 CP0515 CP0516     TRUE 0.996 14.000 0.601 0.044 Y NA
 48093 48094 CP0517 CP0518   adk FALSE 0.285 86.000 0.014 NA N NA
 48095 48096 CP0519 CP0520     FALSE 0.052 212.000 0.000 NA   NA
 48096 48097 CP0520 CP0521     FALSE 0.124 130.000 0.000 NA   NA
 48097 48098 CP0521 CP0522     FALSE 0.029 339.000 0.000 NA   NA
 48099 48100 CP0523 CP0524     TRUE 0.963 34.000 0.021 1.000 Y NA
 48100 48101 CP0524 CP0525     FALSE 0.226 86.000 0.004 1.000 N NA
 48101 48102 CP0525 CP0526     TRUE 0.790 -16.000 0.006 1.000 N NA
 48102 48103 CP0526 CP0527     TRUE 0.831 -24.000 0.018 1.000 N NA
 48104 48105 CP0528 CP0529     TRUE 0.742 28.000 0.000 NA   NA
 48105 48106 CP0529 CP0530     TRUE 0.584 35.000 0.000 NA   NA
 48106 48107 CP0530 CP0531     TRUE 0.705 -33.000 0.000 NA   NA
 48107 48108 CP0531 CP0532     FALSE 0.136 123.000 0.000 NA   NA
 48108 2132632 CP0532 CPt21   tRNA-Ala-2 FALSE 0.189 87.000 0.000 NA   NA
 2132632 2132633 CPt21 CPt22 tRNA-Ala-2 tRNA-Ile-1 TRUE 0.874 5.000 0.000 NA   NA
 2132633 48109 CPt22 CP0533 tRNA-Ile-1   TRUE 0.584 35.000 0.000 NA   NA
 48109 48110 CP0533 CP0534     FALSE 0.214 144.000 0.111 NA   NA
 48112 48113 CP0536 CP0537     TRUE 0.986 -7.000 0.308 NA Y NA
 48114 48115 CP0538 CP0539     TRUE 0.839 22.000 0.000 NA   NA
 48115 48116 CP0539 CP0540     TRUE 0.380 47.000 0.000 NA   NA
 48116 48117 CP0540 CP0541     TRUE 0.721 -21.000 0.000 NA   NA
 48117 48118 CP0541 CP0542     FALSE 0.181 99.000 0.000 NA   NA
 48118 48119 CP0542 CP0543     FALSE 0.154 111.000 0.000 NA   NA
 48119 48120 CP0543 CP0544     FALSE 0.025 437.000 0.000 NA   NA
 48120 48121 CP0544 CP0545     FALSE 0.025 416.000 0.000 NA   NA
 48121 48122 CP0545 CP0546     FALSE 0.050 221.000 0.000 NA   NA
 48125 48126 CP0549 CP0550     FALSE 0.080 156.000 0.000 NA   NA
 48126 48127 CP0550 CP0551     FALSE 0.181 99.000 0.000 NA   NA
 48127 48128 CP0551 CP0552     FALSE 0.178 101.000 0.000 NA   NA
 48128 48129 CP0552 CP0553     FALSE 0.085 152.000 0.000 NA   NA
 48129 48130 CP0553 CP0554     FALSE 0.128 129.000 0.000 NA   NA
 48130 48131 CP0554 CP0555     FALSE 0.198 76.000 0.000 NA   NA
 48132 48133 CP0557 CP0558     FALSE 0.188 91.000 0.000 NA   NA
 48133 48134 CP0558 CP0559     FALSE 0.054 209.000 0.000 NA   NA
 48134 48135 CP0559 CP0560     FALSE 0.074 333.000 0.088 1.000 N NA
 48135 48136 CP0560 CP0561     TRUE 0.680 44.000 0.217 NA   NA
 48136 48137 CP0561 CP0562     FALSE 0.194 79.000 0.000 NA   NA
 48137 48138 CP0562 CP0563     FALSE 0.130 128.000 0.000 NA   NA
 48138 48139 CP0563 CP0564     TRUE 0.898 12.000 0.000 NA   NA
 48139 48140 CP0564 CP0565     FALSE 0.024 505.000 0.000 NA   NA
 48140 48141 CP0565 CP0566     TRUE 0.988 -3.000 0.044 0.018 Y NA
 48141 48142 CP0566 CP0567     TRUE 0.983 -7.000 0.044 1.000 Y NA
 48142 48143 CP0567 CP0568     TRUE 0.982 31.000 0.273 0.022 Y NA
 48143 48144 CP0568 CP0569     FALSE 0.312 293.000 0.000 0.022 Y NA
 48144 48145 CP0569 CP0570     TRUE 0.527 278.000 0.500 0.022 Y NA
 48145 48146 CP0570 CP0571     TRUE 0.844 56.000 0.000 0.022 Y NA
 48146 48147 CP0571 CP0572     TRUE 0.559 151.000 0.000 0.022 Y NA
 48147 48148 CP0572 CP0573     TRUE 0.748 -54.000 0.006 1.000 N NA
 48149 48150 CP0574 CP0575     TRUE 0.675 49.000 0.500 1.000 N NA
 48150 48151 CP0575 CP0576     TRUE 0.991 -10.000 1.000 1.000 Y NA
 48152 48153 CP0577 CP0578     TRUE 0.451 91.000 0.500 NA   NA
 48153 48154 CP0578 CP0579     TRUE 0.870 -3.000 0.017 NA   NA
 48154 48155 CP0579 CP0580     TRUE 0.388 63.000 0.017 1.000   NA
 48155 48156 CP0580 CP0581     FALSE 0.066 177.000 0.000 NA N NA
 48156 48157 CP0581 CP0582     FALSE 0.299 55.000 0.000 NA   NA
 48158 48159 CP0583 CP0584     TRUE 0.803 -13.000 0.007 1.000 N NA
 48159 48160 CP0584 CP0585     TRUE 0.930 23.000 0.120 1.000 N NA
 48160 48161 CP0585 CP0586     TRUE 0.986 -3.000 0.011 0.002 Y NA
 48161 48162 CP0586 CP0587     FALSE 0.080 156.000 0.000 NA   NA
 48162 48163 CP0587 CP0588     TRUE 0.683 -132.000 0.000 NA   NA
 48163 48164 CP0588 CP0589     TRUE 0.694 -51.000 0.000 NA   NA
 48164 48165 CP0589 CP0590     TRUE 0.828 1.000 0.000 NA   NA
 48165 48166 CP0590 CP0591     FALSE 0.064 180.000 0.000 NA   NA
 48166 48167 CP0591 CP0592     FALSE 0.299 55.000 0.000 NA   NA
 48168 48169 CP0593 CP0594     TRUE 0.891 8.000 0.000 NA   NA
 48169 48170 CP0594 CP0595     FALSE 0.070 171.000 0.000 NA   NA
 48170 48171 CP0595 CP0596     TRUE 0.699 -46.000 0.000 NA   NA
 48172 10729973 CP0597 CP0598     FALSE 0.053 211.000 0.000 NA   NA
 10729973 48173 CP0598 CP0599     TRUE 0.836 2.000 0.000 NA   NA
 48173 48174 CP0599 CP0600     FALSE 0.160 120.000 0.000 1.000   NA
 48174 48175 CP0600 CP0601     FALSE 0.154 111.000 0.000 NA   NA
 48175 48176 CP0601 CP0602     FALSE 0.030 315.000 0.000 NA   NA
 48176 48177 CP0602 CP0603     FALSE 0.233 66.000 0.000 NA   NA
 48177 48178 CP0603 CP0604     FALSE 0.161 108.000 0.000 NA   NA
 48179 48180 CP0605 CP0606     TRUE 0.412 45.000 0.000 NA   NA
 48180 48181 CP0606 CP0607     TRUE 0.793 -3.000 0.000 NA   NA
 48181 48182 CP0607 CP0608     TRUE 0.380 47.000 0.000 NA   NA
 48183 48184 CP0609 CP0610     FALSE 0.066 178.000 0.000 NA   NA
 48184 48185 CP0610 CP0611     TRUE 0.970 4.000 0.857 1.000   NA
 48185 48186 CP0611 CP0612     FALSE 0.032 296.000 0.000 NA   NA
 48186 48187 CP0612 CP0613     TRUE 0.613 34.000 0.000 NA   NA
 48187 48188 CP0613 CP0614     FALSE 0.072 168.000 0.000 NA   NA
 48188 48189 CP0614 CP0615     TRUE 0.739 -13.000 0.000 NA   NA
 48189 48190 CP0615 CP0616     FALSE 0.198 76.000 0.000 NA   NA
 2132634 2132635 CPt23 CPt24 tRNA-Met-1 tRNA-Met-2 TRUE 0.888 16.000 0.000 NA   NA
 2132635 48191 CPt24 CP0617 tRNA-Met-2   TRUE 0.820 24.000 0.000 NA   NA
 48191 48192 CP0617 CP0618   leuS TRUE 0.834 -3.000 0.006 1.000 N NA
 48193 48194 CP0619 CP0620     TRUE 0.883 6.000 0.000 NA   NA
 48194 48195 CP0620 CP0621     FALSE 0.227 69.000 0.000 NA   NA
 48195 48196 CP0621 CP0622     TRUE 0.524 39.000 0.000 NA   NA
 48197 48198 CP0623 CP0624     FALSE 0.148 131.000 0.006 NA   NA
 48198 48199 CP0624 CP0625     TRUE 0.923 10.000 0.006 1.000   NA
 48199 48200 CP0625 CP0626     FALSE 0.069 172.000 0.000 NA   NA
 48200 48201 CP0626 CP0627     FALSE 0.131 127.000 0.000 NA   NA
 48201 48202 CP0627 CP0628     FALSE 0.043 241.000 0.000 NA   NA
 48202 48203 CP0628 CP0629     FALSE 0.066 241.000 0.009 1.000   NA
 48204 48205 CP0630 CP0631     FALSE 0.029 409.000 0.000 1.000 N NA
 48205 48206 CP0631 CP0632     TRUE 0.854 -3.000 0.011 NA   NA
 48206 48207 CP0632 CP0633     TRUE 0.934 14.000 0.012 NA   NA
 48207 48208 CP0633 CP0634     FALSE 0.253 71.000 0.006 NA N NA
 48208 48209 CP0634 CP0635     FALSE 0.024 443.000 0.000 NA   NA
 48209 48210 CP0635 CP0636     FALSE 0.272 98.000 0.013 NA   NA
 48210 48211 CP0636 CP0637   groES TRUE 0.334 118.000 0.188 1.000 N NA
 48211 48212 CP0637 CP0638 groES groEL TRUE 0.964 42.000 0.412 0.012 Y NA
 48212 48213 CP0638 CP0639 groEL   FALSE 0.314 130.000 0.400 NA   NA
 48214 48215 CP0640 CP0641     TRUE 0.859 4.000 0.000 NA   NA
 2132636 48216 CPt25 CP0642 tRNA-Asn-1   FALSE 0.204 73.000 0.000 NA   NA
 48217 48218 CP0643 CP0644     TRUE 0.769 -6.000 0.000 NA   NA
 48220 48221 CP0646 CP0647     TRUE 0.691 -55.000 0.000 NA   NA
 48221 48222 CP0647 CP0648     FALSE 0.190 86.000 0.000 NA   NA
 48222 48223 CP0648 CP0649     TRUE 0.805 25.000 0.000 NA   NA
 48225 48226 CP0651 CP0652     TRUE 0.864 0.000 0.008 NA   NA
 48226 48227 CP0652 CP0653     TRUE 0.806 -3.000 0.003 NA   NA
 48227 48228 CP0653 CP0654   rnhB TRUE 0.826 -3.000 0.003 1.000 N NA
 48228 48229 CP0654 CP0655 rnhB   TRUE 0.509 56.000 0.066 1.000 N NA
 48229 48230 CP0655 CP0656   trmD TRUE 0.987 28.000 0.567 1.000 Y NA
 48230 48231 CP0656 CP0657 trmD   TRUE 0.993 14.000 0.033 1.000 Y NA
 48231 48232 CP0657 CP0658     TRUE 0.914 -9.000 0.361 1.000 N NA
 48232 48233 CP0658 CP0659     TRUE 0.915 15.000 0.005 1.000 N NA
 48233 48234 CP0659 CP0660     TRUE 0.977 -10.000 0.009 1.000 Y NA
 48234 48235 CP0660 CP0661     TRUE 0.353 239.000 0.005 1.000 Y NA
 48236 48237 CP0662 CP0663     FALSE 0.189 87.000 0.000 NA   NA
 48237 48238 CP0663 CP0664     TRUE 0.793 -3.000 0.000 NA   NA
 48240 48241 CP0666 CP0667     FALSE 0.113 138.000 0.000 NA   NA
 48243 48244 CP0669 CP0670     FALSE 0.294 151.000 0.750 NA   NA
 48245 48246 CP0671 CP0672     TRUE 0.997 11.000 0.622 0.016 Y NA
 48247 48248 CP0673 CP0674     TRUE 0.828 -18.000 0.018 NA   NA
 48248 48249 CP0674 CP0675     TRUE 0.560 36.000 0.000 NA   NA
 48249 48250 CP0675 CP0676     TRUE 0.610 53.000 0.429 NA   NA
 48253 48254 CP0679 CP0680     TRUE 0.887 21.000 0.006 1.000 N NA
 48254 48255 CP0680 CP0681     FALSE 0.142 134.000 0.006 NA   NA
 48255 48256 CP0681 CP0682     TRUE 0.813 -79.000 0.030 NA   NA
 48256 48257 CP0682 CP0683     TRUE 0.588 95.000 0.848 0.008   NA
 48257 48258 CP0683 CP0684     TRUE 0.988 -9.000 0.270 0.008 Y NA
 48258 48259 CP0684 CP0685     TRUE 0.991 -15.000 0.903 0.008 Y NA
 48259 48260 CP0685 CP0686     TRUE 0.996 5.000 0.806 0.008 Y NA
 48260 48261 CP0686 CP0687     TRUE 0.929 -6.000 0.633 NA   NA
 48261 48262 CP0687 CP0688     TRUE 0.349 49.000 0.000 NA   NA
 48263 48264 CP0689 CP0690     FALSE 0.191 85.000 0.000 NA   NA
 48265 48266 CP0691 CP0692     TRUE 0.715 47.000 0.667 NA   NA
 48266 48267 CP0692 CP0693     FALSE 0.218 103.000 0.006 1.000 N NA
 48267 48268 CP0693 CP0694     TRUE 0.997 12.000 0.851 0.002 Y NA
 48268 48269 CP0694 CP0695     TRUE 0.370 107.000 0.223 1.000 N NA
 48269 48270 CP0695 CP0696   rplJ TRUE 0.964 44.000 0.884 1.000 Y NA
 48270 48271 CP0696 CP0697 rplJ   TRUE 0.994 16.000 0.302 1.000 Y NA
 48271 48272 CP0697 CP0698   rplK TRUE 0.992 27.000 0.838 0.054 Y NA
 48272 48273 CP0698 CP0699 rplK nusG TRUE 0.470 107.000 0.681 1.000 N NA
 48273 48274 CP0699 CP0700 nusG   TRUE 0.973 5.000 0.843 1.000 N NA
 48274 2132637 CP0700 CPt26   tRNA-Trp-1 TRUE 0.657 32.000 0.000 NA   NA
 2132637 48275 CPt26 CP0701 tRNA-Trp-1 tuf TRUE 0.509 40.000 0.000 NA   NA
 48275 2132638 CP0701 CPt27 tuf tRNA-Thr-3 TRUE 0.401 46.000 0.000 NA   NA
 2132638 48276 CPt27 CP0702 tRNA-Thr-3   FALSE 0.193 80.000 0.000 NA   NA
 48277 48278 CP0703 CP0704     TRUE 0.898 -3.000 0.054 NA   NA
 48278 2132639 CP0704 CPt28   tRNA-Met-3 FALSE 0.202 74.000 0.000 NA   NA
 48281 48282 CP0707 CP0708     FALSE 0.032 295.000 0.000 NA   NA
 48282 48283 CP0708 CP0709     FALSE 0.036 271.000 0.000 NA   NA
 48283 48284 CP0709 CP0710     FALSE 0.030 324.000 0.000 NA   NA
 48284 48285 CP0710 CP0711     FALSE 0.198 76.000 0.000 NA   NA
 48285 48286 CP0711 CP0712     FALSE 0.042 243.000 0.000 NA   NA
 48286 48287 CP0712 CP0713     FALSE 0.266 60.000 0.000 NA   NA
 48287 48288 CP0713 CP0714     TRUE 0.386 97.000 0.231 NA   NA
 48288 48289 CP0714 CP0715     TRUE 0.993 3.000 0.231 0.002 Y NA
 48289 48290 CP0715 CP0716   dut TRUE 0.890 2.000 0.008 1.000 N NA
 48290 48291 CP0716 CP0717 dut   TRUE 0.439 51.000 0.008 1.000 N NA
 48291 48292 CP0717 CP0718     FALSE 0.276 82.000 0.009 1.000 N NA
 48292 48293 CP0718 CP0719     FALSE 0.146 185.000 0.067 1.000 N NA
 48293 48294 CP0719 CP0720     FALSE 0.055 360.000 0.034 NA   NA
 48295 48296 CP0721 CP0722 rncS   TRUE 0.783 -34.000 0.007 1.000 N NA
 48296 48297 CP0722 CP0723     TRUE 0.792 -22.000 0.007 1.000 N NA
 48300 48301 CP0726 CP0727     TRUE 0.657 32.000 0.000 NA   NA
 48301 48302 CP0727 CP0728     FALSE 0.044 237.000 0.000 NA   NA
 48302 48303 CP0728 CP0729     FALSE 0.034 288.000 0.000 NA   NA
 48303 48304 CP0729 CP0730     TRUE 0.437 44.000 0.000 NA   NA
 48304 48305 CP0730 CP0731     FALSE 0.145 119.000 0.000 NA   NA
 48305 48306 CP0731 CP0732     TRUE 0.793 -3.000 0.000 NA   NA
 48306 48307 CP0732 CP0733     FALSE 0.273 58.000 0.000 NA   NA
 48307 48308 CP0733 CP0734     FALSE 0.042 242.000 0.000 NA   NA
 48309 48310 CP0735 CP0736     TRUE 0.506 65.000 0.411 NA   NA
 48311 48312 CP0737 CP0738     TRUE 0.990 1.000 0.026 0.005 Y NA
 48312 48313 CP0738 CP0739     TRUE 0.763 -7.000 0.000 NA   NA
 48314 48315 CP0740 CP0741     TRUE 0.685 -85.000 0.000 NA   NA
 48315 48316 CP0741 CP0742     FALSE 0.203 82.000 0.002 NA   NA
 48317 48318 CP0743 CP0744     TRUE 0.577 37.000 0.000 1.000 N NA
 48318 48319 CP0744 CP0745     TRUE 0.820 36.000 0.412 1.000   NA
 48319 48320 CP0745 CP0746     FALSE 0.088 179.000 0.006 1.000   NA
 48321 48322 CP0747 CP0748     FALSE 0.249 62.000 0.000 NA   NA
 48322 48323 CP0748 CP0749     FALSE 0.031 306.000 0.000 NA   NA
 48323 48324 CP0749 CP0750     FALSE 0.088 150.000 0.000 NA   NA
 48324 48325 CP0750 CP0751     FALSE 0.082 155.000 0.000 NA   NA
 48325 48326 CP0751 CP0752     FALSE 0.277 85.000 0.009 1.000   NA
 48326 48327 CP0752 CP0753     TRUE 0.419 55.000 0.010 1.000   NA
 48327 48328 CP0753 CP0754   maf TRUE 0.820 29.000 0.017 NA   NA
 48328 48329 CP0754 CP0755 maf   TRUE 0.825 -18.000 0.017 NA N NA
 48329 48330 CP0755 CP0756     TRUE 0.914 -10.000 0.500 NA   NA
 10729974 48331 CP0757 CP0758     TRUE 0.888 16.000 0.000 NA   NA
 48331 10729975 CP0758 CP0759     FALSE 0.096 145.000 0.000 NA   NA
 10729975 48332 CP0759 CP0761     FALSE 0.023 3307.000 0.000 NA   NA
 48332 48333 CP0761 CP0762     FALSE 0.026 369.000 0.000 NA   NA
 48333 48334 CP0762 CP0763     TRUE 0.768 27.000 0.000 NA   NA
 48334 48335 CP0763 CP0764     FALSE 0.102 143.000 0.000 NA   NA
 48335 48336 CP0764 CP0765     FALSE 0.031 310.000 0.000 NA   NA
 48336 48337 CP0765 CP0766     FALSE 0.131 127.000 0.000 NA   NA
 48337 48338 CP0766 CP0767     FALSE 0.165 106.000 0.000 NA   NA
 48338 48339 CP0767 CP0768     FALSE 0.153 112.000 0.000 NA   NA
 48339 48340 CP0768 CP0769     TRUE 0.693 -52.000 0.000 NA   NA
 48340 48341 CP0769 CP0770     FALSE 0.024 638.000 0.000 NA   NA
 48341 48342 CP0770 CP0771     FALSE 0.038 291.000 0.000 1.000   NA
 48342 48343 CP0771 CP0772     TRUE 0.992 -3.000 0.492 0.003 Y NA
 48343 48344 CP0772 CP0773     TRUE 0.996 17.000 0.643 0.003 Y NA
 48344 48345 CP0773 CP0774     TRUE 0.859 4.000 0.000 NA   NA
 48346 2132640 CP0775 CPt29   tRNA-Ser-3 FALSE 0.055 203.000 0.000 NA   NA
 48347 48348 CP0776 CP0777     FALSE 0.276 173.000 1.000 NA   NA
 48348 48349 CP0777 CP0778     FALSE 0.040 253.000 0.000 NA   NA
 48350 48351 CP0779 CP0780     FALSE 0.026 372.000 0.000 NA   NA
 48354 48355 CP0783 CP0784 def   FALSE 0.050 244.000 0.002 1.000 N NA
 48355 48356 CP0784 CP0785     FALSE 0.044 237.000 0.000 NA   NA
 48356 48357 CP0785 CP0786     TRUE 0.859 4.000 0.000 NA   NA
 48358 48359 CP0787 CP0788   xseB TRUE 0.965 4.000 0.412 0.002   NA
 48359 48360 CP0788 CP0789 xseB   TRUE 0.900 5.000 0.007 NA   NA
 48360 48361 CP0789 CP0790     TRUE 0.915 5.000 0.011 NA   NA
 48362 48363 CP0791 CP0792 ksgA   TRUE 0.913 9.000 0.005 1.000   NA
 48363 48364 CP0792 CP0793     FALSE 0.305 149.000 0.667 1.000   NA
 48364 48365 CP0793 CP0794     FALSE 0.037 266.000 0.000 NA   NA
 48365 48366 CP0794 CP0795     TRUE 0.714 -24.000 0.000 NA   NA
 48366 48367 CP0795 CP0796     FALSE 0.048 228.000 0.000 NA   NA
 48367 48368 CP0796 CP0797     TRUE 0.894 15.000 0.000 NA   NA
 48368 48369 CP0797 CP0798     FALSE 0.030 317.000 0.000 NA   NA
 48369 48370 CP0798 CP0799     TRUE 0.872 18.000 0.000 NA   NA
 48370 48371 CP0799 CP0800     TRUE 0.725 -19.000 0.000 NA   NA
 48371 48372 CP0800 CP0801     FALSE 0.099 144.000 0.000 NA   NA
 48372 48373 CP0801 CP0802   dapA FALSE 0.078 161.000 0.000 NA   NA
 48373 48374 CP0802 CP0803 dapA   TRUE 0.993 9.000 0.021 1.000 Y NA
 48374 48375 CP0803 CP0804     TRUE 0.980 -12.000 0.022 1.000 Y NA
 48375 48376 CP0804 CP0805     TRUE 0.352 260.000 0.005 0.047 Y NA
 48377 48378 CP0806 CP0807     TRUE 0.850 -9.000 0.020 NA   NA
 48378 48379 CP0807 CP0808     FALSE 0.054 207.000 0.000 NA   NA
 48379 48380 CP0808 CP0809     TRUE 0.972 -21.000 0.008 1.000 Y NA
 48380 48381 CP0809 CP0810     TRUE 0.981 -21.000 0.097 1.000 Y NA
 48381 48382 CP0810 CP0811     TRUE 0.982 -63.000 0.124 0.003 Y NA
 48382 48383 CP0811 CP0812     TRUE 0.768 -18.000 0.003 1.000   NA
 48383 48384 CP0812 CP0813     FALSE 0.243 71.000 0.000 1.000   NA
 48384 48385 CP0813 CP0814     TRUE 0.965 -64.000 0.006 1.000 Y NA
 48385 48386 CP0814 CP0815     TRUE 0.979 -3.000 0.006 1.000 Y NA
 48386 48387 CP0815 CP0816     TRUE 0.985 -15.000 0.110 0.004 Y NA
 48387 48388 CP0816 CP0817   aroDE TRUE 0.977 -19.000 0.007 0.004 Y NA
 48388 48389 CP0817 CP0818 aroDE   TRUE 0.585 50.000 0.214 NA   NA
 48389 48390 CP0818 CP0819     FALSE 0.126 229.000 0.300 NA   NA
 48390 48391 CP0819 CP0820     TRUE 0.853 34.000 0.429 1.000   NA
 48391 48392 CP0820 CP0821     TRUE 0.969 11.000 0.429 1.000   NA
 48392 48393 CP0821 CP0822     TRUE 0.454 209.000 0.011 1.000 Y NA
 48394 48395 CP0823 CP0824     TRUE 0.890 24.000 0.018 NA   NA
 48395 48396 CP0824 CP0825     FALSE 0.038 258.000 0.000 NA   NA
 48396 48397 CP0825 CP0826     TRUE 0.584 35.000 0.000 NA   NA
 48397 48398 CP0826 CP0827     FALSE 0.310 115.000 0.133 NA   NA
 48400 2132641 CP0829 CPt30   tRNA-Leu-5 FALSE 0.188 91.000 0.000 NA   NA
 48401 48402 CP0830 CP0831     TRUE 0.793 -3.000 0.000 NA   NA
 48402 48403 CP0831 CP0832     TRUE 0.820 0.000 0.000 NA   NA
 48403 48404 CP0832 CP0833     TRUE 0.888 16.000 0.000 NA   NA
 48404 48405 CP0833 CP0834     TRUE 0.971 19.000 1.000 NA   NA
 48406 48407 CP0835 CP0836     TRUE 0.584 35.000 0.000 NA   NA
 48407 48408 CP0836 CP0837     TRUE 0.412 105.000 0.400 1.000   NA
 48408 48409 CP0837 CP0838     FALSE 0.251 146.000 0.400 NA   NA
 48412 10729976 CP0841 CP0842     FALSE 0.120 133.000 0.000 NA   NA
 10729976 48413 CP0842 CP0843     TRUE 0.892 9.000 0.000 NA   NA
 48413 48414 CP0843 CP0844     TRUE 0.962 6.000 0.429 NA N NA
 48415 48416 CP0845 CP0846     TRUE 0.896 30.000 0.571 NA   NA
 48417 48418 CP0847 CP0848     TRUE 0.704 54.000 1.000 NA   NA
 48418 48419 CP0848 CP0849     TRUE 0.978 15.000 1.000 NA   NA
 48419 48420 CP0849 CP0850     TRUE 0.557 80.000 1.000 NA   NA
 48421 48422 CP0851 CP0852     TRUE 0.831 -10.000 0.013 NA   NA
 48423 48424 CP0853 CP0854     TRUE 0.898 12.000 0.000 NA   NA
 48424 48425 CP0854 CP0855     TRUE 0.959 41.000 0.335 1.000 Y NA
 48425 48426 CP0855 CP0856     FALSE 0.210 72.000 0.000 NA   NA
 48427 48428 CP0857 CP0858     FALSE 0.154 188.000 0.145 1.000 N NA
 48429 48430 CP0859 CP0860     TRUE 0.968 4.000 0.631 0.041   NA
 48431 2132642 CP0861 CPt31   tRNA-Ser-4 FALSE 0.034 280.000 0.000 NA   NA
 2132642 48432 CPt31 CP0862 tRNA-Ser-4 pheS TRUE 0.828 1.000 0.000 NA   NA
 48432 48433 CP0862 CP0863 pheS   TRUE 0.994 15.000 0.202 1.000 Y NA
 48433 48434 CP0863 CP0864   rpmI TRUE 0.996 19.000 0.928 0.036 Y NA
 48434 48435 CP0864 CP0865 rpmI   TRUE 0.986 -22.000 0.652 1.000 Y NA
 48436 48437 CP0866 CP0867 nusB murB TRUE 0.839 27.000 0.008 1.000 N NA
 48439 48440 CP0869 CP0870     TRUE 0.793 -3.000 0.000 NA   NA
 48440 48441 CP0870 CP0871     TRUE 0.805 25.000 0.000 NA   NA
 48441 48442 CP0871 CP0872     TRUE 0.995 21.000 0.564 0.002 Y NA
 48443 48444 CP0873 CP0874     TRUE 0.928 9.000 0.011 NA   NA
 48447 48448 CP0877 CP0878     FALSE 0.034 284.000 0.000 NA   NA
 48448 48449 CP0878 CP0879     FALSE 0.038 260.000 0.000 NA   NA
 48449 48450 CP0879 CP0880     FALSE 0.061 186.000 0.000 NA   NA
 48450 48451 CP0880 CP0881     FALSE 0.195 78.000 0.000 NA   NA
 48451 48452 CP0881 CP0882     FALSE 0.046 230.000 0.000 NA   NA
 48452 48453 CP0882 CP0883     FALSE 0.159 109.000 0.000 NA   NA
 48453 48454 CP0883 CP0884     FALSE 0.032 295.000 0.000 NA   NA
 48454 48455 CP0884 CP0885     TRUE 0.349 49.000 0.000 NA   NA
 48455 48456 CP0885 CP0886   sucC TRUE 0.996 14.000 0.467 0.002 Y NA
 48458 48459 CP0888 CP0889     TRUE 0.638 51.000 0.500 NA   NA
 48459 48460 CP0889 CP0890     FALSE 0.189 88.000 0.000 NA   NA
 48460 48461 CP0890 CP0891     FALSE 0.331 51.000 0.000 NA   NA
 48461 48462 CP0891 CP0892     FALSE 0.243 88.000 0.006 1.000 N NA
 48462 48463 CP0892 CP0893     TRUE 0.946 7.000 0.030 1.000 N NA
 48464 48465 CP0894 CP0895   lpxB TRUE 0.933 9.000 0.010 1.000 N NA
 48465 48466 CP0895 CP0896 lpxB   FALSE 0.086 164.000 0.000 1.000   NA
 48467 48468 CP0897 CP0898     FALSE 0.175 120.000 0.005 1.000   NA
 48468 48469 CP0898 CP0899     TRUE 0.966 16.000 0.418 1.000 N NA
 48469 48470 CP0899 CP0900     TRUE 0.908 13.000 0.005 NA   NA
 48471 48472 CP0901 CP0902     TRUE 0.946 11.000 0.019 1.000   NA
 48472 48473 CP0902 CP0903     TRUE 0.854 2.000 0.000 1.000   NA
 48474 10729977 CP0904 CP0905     FALSE 0.025 382.000 0.000 NA   NA
 10729977 48475 CP0905 CP0906     TRUE 0.584 35.000 0.000 NA   NA
 48475 48476 CP0906 CP0907   rpsR TRUE 0.996 16.000 0.499 0.035 Y NA
 48476 48477 CP0907 CP0908 rpsR rpsF TRUE 0.994 18.000 0.319 0.035 Y NA
 48477 48478 CP0908 CP0909 rpsF   TRUE 0.815 92.000 0.029 0.056 Y NA
 48478 48479 CP0909 CP0910     TRUE 0.993 2.000 0.496 0.056 Y NA
 48479 2132644 CP0910 CPt33   tRNA-Gln-1 FALSE 0.040 253.000 0.000 NA   NA
 48483 48484 CP0914 CP0915     TRUE 0.468 70.000 0.333 NA   NA
 48484 48485 CP0915 CP0916     FALSE 0.094 146.000 0.000 NA   NA
 48485 48486 CP0916 CP0917     TRUE 0.845 3.000 0.000 NA   NA
 48486 48487 CP0917 CP0918     FALSE 0.266 60.000 0.000 NA   NA
 48487 48488 CP0918 CP0919     FALSE 0.278 57.000 0.000 NA   NA
 48489 48490 CP0920 CP0921     TRUE 0.986 3.000 0.006 1.000 Y NA
 48493 48494 CP0924 CP0925     TRUE 0.917 23.000 0.013 0.035   NA
 48495 48496 CP0926 CP0927   rnpA TRUE 0.977 12.000 0.787 1.000   NA
 48498 48499 CP0929 CP0930     TRUE 0.793 -3.000 0.000 NA   NA
 48499 48500 CP0930 CP0931   cysS FALSE 0.210 72.000 0.000 NA   NA
 48501 48502 CP0932 CP0933 lysS   FALSE 0.104 142.000 0.000 NA   NA
 48502 48503 CP0933 CP0934     FALSE 0.134 125.000 0.000 NA   NA
 48503 48504 CP0934 CP0935     FALSE 0.036 276.000 0.000 NA   NA
 48505 48506 CP0936 CP0937     TRUE 0.696 30.000 0.000 NA   NA
 48506 48507 CP0937 CP0938     FALSE 0.056 202.000 0.000 NA   NA
 48507 48508 CP0938 CP0939     FALSE 0.210 72.000 0.000 NA   NA
 48510 48511 CP0941 CP0942     TRUE 0.745 -51.000 0.007 NA   NA
 48512 48513 CP0943 CP0944     TRUE 0.505 54.000 0.032 1.000 N NA
 48513 48514 CP0944 CP0945     TRUE 0.993 18.000 0.032 0.031 Y NA
 48518 48519 CP0949 CP0950     TRUE 0.948 3.000 0.333 1.000 N NA
 48519 48520 CP0950 CP0951     TRUE 0.908 17.000 0.008 NA   NA
 48520 48521 CP0951 CP0952     FALSE 0.257 61.000 0.000 NA   NA
 48521 48522 CP0952 CP0953     FALSE 0.331 51.000 0.000 NA   NA
 48522 48523 CP0953 CP0954     TRUE 0.793 -3.000 0.000 NA   NA
 48525 48526 CP0956 CP0957     TRUE 0.953 10.000 0.040 1.000 N NA
 48527 48528 CP0958 CP0959     TRUE 0.851 -3.000 0.010 NA   NA
 48528 48529 CP0959 CP0960     FALSE 0.255 102.000 0.009 1.000   NA
 48530 48531 CP0961 CP0962   murG TRUE 0.995 10.000 0.270 1.000 Y NA
 48531 48532 CP0962 CP0963 murG   TRUE 0.835 -94.000 0.037 1.000 N NA
 48532 48533 CP0963 CP0964     TRUE 0.945 19.000 0.088 1.000 N NA
 48533 48534 CP0964 CP0965   murD TRUE 0.986 3.000 0.006 1.000 Y NA
 48534 48535 CP0965 CP0966 murD   TRUE 0.995 3.000 0.647 0.006 Y NA
 48535 48536 CP0966 CP0967     TRUE 0.993 17.000 0.018 0.006 Y NA
 2132645 48537 CPt34 CP0968 tRNA-Cys-1   FALSE 0.204 73.000 0.000 NA   NA
 48537 48538 CP0968 CP0969     FALSE 0.151 164.000 0.027 1.000   NA
 48539 48540 CP0970 CP0971     TRUE 0.473 44.000 0.006 NA   NA
 48543 48544 CP0974 CP0975     TRUE 0.768 -30.000 0.006 1.000 N NA
 48544 48545 CP0975 CP0976     TRUE 0.924 11.000 0.006 1.000 N NA
 48545 48546 CP0976 CP0977     TRUE 0.979 -19.000 0.012 0.004 Y NA
 48546 48547 CP0977 CP0978     TRUE 0.967 36.000 0.056 0.004 Y NA
 48549 48550 CP0980 CP0981     FALSE 0.085 270.000 0.048 1.000   NA
 48550 48551 CP0981 CP0982   yajC FALSE 0.266 71.000 0.007 NA N NA
 48551 48552 CP0982 CP0983 yajC   FALSE 0.134 141.000 0.007 NA N NA
 48555 2132646 CP0986 CPr01     FALSE 0.099 144.000 0.000 NA   NA
 2132646 2132647 CPr01 CPr02     FALSE 0.159 109.000 0.000 NA   NA
 48556 48557 CP0987 CP0988     FALSE 0.023 2059.000 0.000 NA   NA
 2132649 48558 CPt35 CP0989 tRNA-His-1   FALSE 0.189 88.000 0.000 NA   NA
 48558 48559 CP0989 CP0990     TRUE 0.908 2.000 0.016 1.000   NA
 48559 48560 CP0990 CP0991     TRUE 0.849 -12.000 0.016 1.000   NA
 48561 48562 CP0992 CP0993     TRUE 0.963 13.000 0.316 NA   NA
 48562 48563 CP0993 CP0994     TRUE 0.337 119.000 0.316 NA   NA
 48565 48566 CP0996 CP0997 ribH   TRUE 0.993 14.000 0.006 0.004 Y NA
 48566 48567 CP0997 CP0998     TRUE 0.847 61.000 0.007 0.004 Y NA
 48568 48569 CP0999 CP1000     TRUE 0.712 44.000 0.286 1.000   NA
 48569 48570 CP1000 CP1001     TRUE 0.847 -63.000 0.052 1.000   NA
 48573 48574 CP1004 CP1005     TRUE 0.704 41.000 0.080 NA   NA
 48575 48576 CP1006 CP1007     TRUE 0.827 -45.000 0.021 1.000 N NA
 48576 48577 CP1007 CP1008     TRUE 0.915 -3.000 0.138 1.000 N NA
 48577 48578 CP1008 CP1009     FALSE 0.080 292.000 0.136 NA N NA
 48578 48579 CP1009 CP1010     TRUE 0.963 17.000 0.500 NA   NA
 48579 48580 CP1010 CP1011     TRUE 0.902 -3.000 0.081 NA   NA
 48580 48581 CP1011 CP1012     TRUE 0.904 -3.000 0.108 NA   NA
 48581 48582 CP1012 CP1013     TRUE 0.951 12.000 0.044 NA   NA
 48582 48583 CP1013 CP1014   gpsA TRUE 0.903 -3.000 0.044 1.000 N NA
 48583 48584 CP1014 CP1015 gpsA   FALSE 0.223 154.000 0.375 NA   NA
 48585 48586 CP1016 CP1017     TRUE 0.967 21.000 1.000 NA   NA
 48586 48587 CP1017 CP1018     FALSE 0.250 118.000 0.026 NA   NA
 48587 48588 CP1018 CP1019     TRUE 0.905 3.000 0.011 1.000 N NA
 48588 48589 CP1019 CP1020     TRUE 0.919 5.000 0.009 1.000 N NA
 2132650 48590 CPt36 CP1021 tRNA-Gly-1 tig TRUE 0.613 34.000 0.000 NA   NA
 48590 48591 CP1021 CP1022 tig   TRUE 0.622 179.000 0.351 1.000 Y NA
 48591 48592 CP1022 CP1023     TRUE 0.995 10.000 0.352 1.000 Y NA
 48592 48593 CP1023 CP1024     TRUE 0.754 30.000 0.006 1.000 N NA
 48593 48594 CP1024 CP1025     FALSE 0.192 117.000 0.006 1.000   NA
 48594 48595 CP1025 CP1026     FALSE 0.215 76.000 0.005 NA   NA
 48596 48597 CP1027 CP1028     FALSE 0.186 94.000 0.000 NA   NA
 48597 48598 CP1028 CP1029     FALSE 0.071 184.000 0.000 1.000   NA
 48598 48599 CP1029 CP1030     FALSE 0.294 60.000 0.000 1.000   NA
 48600 48601 CP1031 CP1032     TRUE 0.923 7.000 0.007 1.000   NA
 48601 48602 CP1032 CP1033     FALSE 0.076 185.000 0.004 1.000 N NA
 48602 48603 CP1033 CP1034     TRUE 0.901 30.000 0.545 1.000 N NA
 48605 48606 CP1036 CP1037     FALSE 0.041 246.000 0.000 NA   NA
 48606 48607 CP1037 CP1038     TRUE 0.861 -3.000 0.009 1.000 N NA
 48610 48611 CP1041 CP1042     FALSE 0.028 350.000 0.000 NA   NA
 48612 48613 CP1043 CP1044     TRUE 0.958 0.000 0.875 NA   NA
 48613 48614 CP1044 CP1045     TRUE 0.376 121.000 0.556 NA   NA
 48614 48615 CP1045 CP1046     TRUE 0.996 15.000 0.700 1.000 Y NA
 48615 48616 CP1046 CP1047     TRUE 0.997 12.000 0.700 0.010 Y NA
 48616 48617 CP1047 CP1048     TRUE 0.996 8.000 0.875 1.000 Y NA
 48618 48619 CP1049 CP1050     TRUE 0.553 85.000 1.000 NA   NA
 48619 48620 CP1050 CP1051     TRUE 0.966 5.000 0.667 NA   NA
 48620 48621 CP1051 CP1052     TRUE 0.957 3.000 0.667 NA   NA
 48621 48622 CP1052 CP1053     TRUE 0.970 16.000 0.667 NA   NA
 48622 48623 CP1053 CP1054     TRUE 0.901 24.000 0.030 NA   NA
 48623 48624 CP1054 CP1055     TRUE 0.993 10.000 0.035 1.000 Y NA
 48624 48625 CP1055 CP1056     TRUE 0.987 -10.000 0.467 1.000 Y NA
 48625 48626 CP1056 CP1057     TRUE 0.943 1.000 0.467 NA   NA
 48626 48627 CP1057 CP1058     FALSE 0.113 170.000 0.014 NA   NA
 48627 48628 CP1058 CP1059     TRUE 0.913 5.000 0.007 1.000 N NA
 48629 48630 CP1060 CP1061     TRUE 0.850 21.000 0.000 NA   NA
 48630 48631 CP1061 CP1062     TRUE 0.853 37.000 0.857 NA   NA
 48631 48632 CP1062 CP1063     TRUE 0.912 33.000 0.750 0.006   NA
 48634 48635 CP1065 CP1066     TRUE 0.803 33.000 0.035 1.000 N NA
 48635 48636 CP1066 CP1067     TRUE 0.972 5.000 0.875 NA   NA
 48636 48637 CP1067 CP1068     TRUE 0.964 4.000 0.750 NA   NA
 48637 48638 CP1068 CP1069     TRUE 0.947 9.000 0.039 NA   NA
 48638 48639 CP1069 CP1070     TRUE 0.932 9.000 0.006 0.043 N NA
 48639 48640 CP1070 CP1071   eno FALSE 0.077 192.000 0.006 1.000 N NA
 48640 48641 CP1071 CP1072 eno   FALSE 0.038 260.000 0.000 NA   NA
 48642 48643 CP1073 CP1074     FALSE 0.090 149.000 0.000 NA   NA
 48643 48644 CP1074 CP1075     FALSE 0.039 257.000 0.000 NA   NA
 48644 48645 CP1075 CP1076     FALSE 0.140 121.000 0.000 NA   NA
 48645 48646 CP1076 CP1077     FALSE 0.140 121.000 0.000 NA   NA
 48646 48647 CP1077 CP1078     FALSE 0.084 153.000 0.000 NA   NA
 48648 48649 CP1079 CP1080     TRUE 0.948 -3.000 0.750 1.000   NA
 48649 48650 CP1080 CP1081     TRUE 0.589 55.000 0.429 NA   NA
 48651 48652 CP1082 CP1083     TRUE 0.996 11.000 0.231 0.003 Y NA
 48652 48653 CP1083 CP1084     TRUE 0.994 4.000 0.179 0.003 Y NA
 48653 48654 CP1084 CP1085     FALSE 0.139 138.000 0.007 NA N NA
 48654 48655 CP1085 CP1086     FALSE 0.040 323.000 0.008 NA N NA
 48656 48657 CP1087 CP1088     TRUE 0.992 -3.000 0.583 0.027 Y NA
 48657 48658 CP1088 CP1089     TRUE 0.956 4.000 0.500 NA   NA
 48658 48659 CP1089 CP1090   tolB TRUE 0.894 32.000 0.750 NA   NA
 48659 48660 CP1090 CP1091 tolB   TRUE 0.948 -3.000 0.750 1.000 N NA
 48660 48661 CP1091 CP1092     TRUE 0.935 -10.000 0.750 1.000   NA
 48661 48662 CP1092 CP1093     TRUE 0.462 107.000 0.750 NA   NA
 48663 2132651 CP1094 CPt37   tRNA-Arg-1 TRUE 0.772 -4.000 0.000 NA   NA
 2132651 48664 CPt37 CP1095 tRNA-Arg-1   FALSE 0.050 219.000 0.000 NA   NA
 48664 48665 CP1095 CP1096     FALSE 0.315 111.000 0.128 NA   NA
 48667 48668 CP1098 CP1099     TRUE 0.908 -3.000 0.140 NA   NA
 48669 48670 CP1100 CP1101     TRUE 0.912 3.000 0.015 1.000 N NA
 48673 48674 CP1104 CP1105     TRUE 0.769 -21.000 0.005 1.000   NA
 48675 48676 CP1106 CP1107     TRUE 0.977 9.000 1.000 NA   NA
 48676 48677 CP1107 CP1108     TRUE 0.912 -9.000 0.429 NA   NA
 48677 48678 CP1108 CP1109     TRUE 0.909 10.000 0.006 NA   NA
 48678 48679 CP1109 CP1110   recA FALSE 0.035 372.000 0.000 0.098 N NA
 48680 48681 CP1111 CP1112     TRUE 0.948 7.000 0.055 NA   NA
 48681 48682 CP1112 CP1113     TRUE 0.806 -43.000 0.017 NA   NA
 48682 48683 CP1113 CP1114     TRUE 0.983 26.000 0.015 1.000 Y NA
 48683 48684 CP1114 CP1115     TRUE 0.977 -27.000 0.030 1.000 Y NA
 48684 48685 CP1115 CP1116     TRUE 0.502 54.000 0.030 1.000 N NA
 48685 48686 CP1116 CP1117     TRUE 0.507 102.000 0.857 NA   NA
 48687 48688 CP1118 CP1119 rpsT   TRUE 0.693 31.000 0.004 NA   NA
 48689 48690 CP1120 CP1121     FALSE 0.142 167.000 0.023 1.000   NA
 48691 48692 CP1122 CP1123     TRUE 0.690 -58.000 0.000 NA   NA
 48692 48693 CP1123 CP1124     FALSE 0.249 62.000 0.000 NA   NA
 48693 48694 CP1124 CP1125     TRUE 0.901 16.000 0.000 1.000   NA
 2132652 48695 CPt38 CP1126 tRNA-Pro-1   FALSE 0.028 356.000 0.000 NA   NA
 48696 48697 CP1127 CP1128     TRUE 0.898 13.000 0.000 NA   NA
 48697 47586 CP1128 CP0001     FALSE 0.050 221.000 0.000 NA   NA