MicrobesOnline Operon Predictions for Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 2736997 2736998 SMU_151 SMU_150 rpoA rpsD TRUE 0.863 33.000 0.549 1.000   NA
 2736998 2736999 SMU_150 SMU_149 rpsD rpsK TRUE 0.955 13.000 0.509 NA Y NA
 2736999 2737000 SMU_149 SMU_148 rpsK rpsM TRUE 0.952 1.000 0.810 NA Y NA
 2737000 2737001 SMU_148 SMU_147 rpsM infA TRUE 0.938 118.000 0.075 0.090 Y NA
 2737001 2737002 SMU_147 SMU_146 infA secY FALSE 0.650 12.000 0.083 1.000 N NA
 2737002 2737003 SMU_146 SMU_145 secY rplO TRUE 0.725 3.000 0.730 1.000 N NA
 2737003 2737004 SMU_145 SMU_144 rplO rpsE TRUE 0.949 33.000 0.148 1.000 Y NA
 2737004 2737005 SMU_144 SMU_143 rpsE rplR TRUE 0.951 13.000 0.814 NA Y NA
 2737005 2737006 SMU_143 SMU_142 rplR rplF TRUE 0.950 7.000 0.815 NA Y NA
 2737006 2737007 SMU_142 SMU_141 rplF rpsH TRUE 0.953 13.000 0.808 NA Y NA
 2737007 2737008 SMU_141 SMU_140 rpsH rpsN TRUE 0.951 3.000 0.295 NA Y NA
 2737008 2737009 SMU_140 SMU_139 rpsN rplE TRUE 0.953 -7.000 0.309 NA Y NA
 2737009 2737010 SMU_139 SMU_138 rplE rplN TRUE 0.806 281.000 0.003 NA Y NA
 2737010 2737011 SMU_138 SMU_137 rplN rpsQ TRUE 0.953 4.000 0.791 NA Y NA
 2737011 2737012 SMU_137 SMU_136 rpsQ rplP TRUE 0.891 29.000 0.009 NA Y NA
 2737012 2737013 SMU_136 SMU_135 rplP rpsC TRUE 0.948 19.000 0.828 NA Y NA
 2737013 2737014 SMU_135 SMU_134 rpsC rplV TRUE 0.955 -10.000 0.719 1.000 Y NA
 2737014 2737015 SMU_134 SMU_133 rplV rpsS TRUE 0.954 8.000 0.769 1.000 Y NA
 2737015 2737016 SMU_133 SMU_132 rpsS rplB TRUE 0.949 8.000 0.820 1.000 Y NA
 2737016 2737017 SMU_132 SMU_131 rplB rplD FALSE 0.691 224.000 0.000 NA Y NA
 2737017 2737018 SMU_131 SMU_130 rplD rplC TRUE 0.955 -3.000 0.544 NA Y NA
 2737018 2737019 SMU_130 SMU_129 rplC rpsJ TRUE 0.955 6.000 0.467 NA Y NA
 2737019 2737020 SMU_129 SMU_128 rpsJ fusA TRUE 0.936 8.000 0.075 1.000 Y NA
 2737020 2737021 SMU_128 SMU_032 fusA rpsG TRUE 0.940 14.000 0.077 NA Y NA
 2737024 2737025 SMU_051 SMU_rRNA02 sucC   FALSE 0.063 171.000 0.000 NA   NA
 2737026 2737027 SMU_048 SMU_049   ispB FALSE 0.063 4494.000 0.000 NA   NA
 2737027 2737028 SMU_049 SMU_050 ispB sufE FALSE 0.537 16.000 0.004 1.000   NA
 2737029 2737030 SMU_117 SMU_116 pheS ilvA FALSE 0.144 10.000 0.002 1.000   NA
 2737030 2737031 SMU_116 SMU_115 ilvA ilvC TRUE 0.918 390.000 0.033 1.000 Y NA
 2737031 2737032 SMU_115 SMU_114 ilvC ilvN FALSE 0.336 10.000 0.002 NA   NA
 2737032 2737033 SMU_114 SMU_113 ilvN ilvB TRUE 0.737 5.000 0.022 NA   NA
 2737033 2737034 SMU_113 SMU_112 ilvB ilvD TRUE 0.955 0.000 0.484 0.029 Y NA
 2737035 2737036 SMU_110 SMU_111 lipB valS FALSE 0.063 25.000 0.000 NA   NA
 2737037 2737038 SMU_046 SMU_045 rpoB rplL FALSE 0.020 445.000 0.000 1.000 N NA
 2737038 2737039 SMU_045 SMU_044 rplL rplA TRUE 0.952 -3.000 0.302 1.000 Y NA
 2737039 2737040 SMU_044 SMU_043 rplA rplK TRUE 0.946 8.000 0.838 1.000 Y NA
 2737040 2737041 SMU_043 SMU_042 rplK tuf FALSE 0.691 248.000 0.000 1.000 Y NA
 2737043 2737044 SMU_066 SMU_065 rpsB rpsI TRUE 0.931 7.000 0.060 NA Y NA
 2737045 2737046 SMU_062 SMU_063 dnaK rpmI FALSE 0.063 587.000 0.000 NA   NA
 2737046 2737047 SMU_063 SMU_064 rpmI rplT TRUE 0.816 7.000 0.928 NA   NA
 2737049 2737050 SMU_057 SMU_056 leuB leuD TRUE 0.948 3.000 0.147 0.018 Y NA
 2737050 2737051 SMU_056 SMU_055 leuD leuC TRUE 0.954 8.000 0.449 0.012 Y NA
 2737051 2737052 SMU_055 SMU_054 leuC leuA TRUE 0.944 2.000 0.088 1.000 Y NA
 2737055 2737056 SMU_061 SMU_060 trmH gapA FALSE 0.020 523.000 0.000 1.000 N NA
 2737058 2737059 SMU_059 SMU_002 pdhC pdhA TRUE 0.835 12.000 0.101 0.058   NA
 2737060 2737061 SMU_025 SMU_119 carB argF TRUE 0.761 0.000 0.040 1.000   NA
 2737061 2737062 SMU_119 SMU_120 argF argB TRUE 0.928 -3.000 0.056 1.000 Y NA
 2737062 2737063 SMU_120 SMU_121 argB argE TRUE 0.925 -9.000 0.053 1.000 Y NA
 2737063 2737064 SMU_121 SMU_122 argE aroK FALSE 0.691 234.000 0.000 1.000 Y NA
 2737064 2737065 SMU_122 SMU_123 aroK   FALSE 0.622 8.000 0.004 1.000   NA
 2737066 2737067 SMU_005 SMU_067 groES groEL TRUE 0.954 9.000 0.774 0.029 Y NA
 2737067 2737068 SMU_067 SMU_068 groEL   FALSE 0.063 1123.000 0.000 1.000   NA
 2737069 2737070 SMU_069 SMU_006 tatC sucB FALSE 0.596 9.000 0.004 NA   NA
 2737071 2737072 SMU_073 SMU_072 asd rpsT FALSE 0.357 33.000 0.002 1.000   NA
 2737072 2737073 SMU_072 SMU_071 rpsT aroA FALSE 0.063 90.000 0.000 1.000   NA
 2737073 2737074 SMU_071 SMU_070 aroA rpsP FALSE 0.020 20.000 0.000 NA N NA
 2737074 2737075 SMU_070 SMU_007 rpsP gyrB FALSE 0.020 118.000 0.000 NA N NA
 2737076 2737077 SMU_008 SMU_074 trpS   FALSE 0.063 -7.000 0.000 1.000   NA
 2737077 2737078 SMU_074 SMU_075   korA FALSE 0.020 3.000 0.000 0.023 N NA
 2737078 2737079 SMU_075 SMU_076 korA   FALSE 0.063 204.000 0.000 NA   NA
 2737081 2737082 SMU_028 SMU_124 pheT aroB TRUE 0.839 34.000 0.133 1.000   NA
 2737082 2737083 SMU_124 SMU_125 aroB gyrA FALSE 0.020 -13.000 0.002 1.000 N NA
 2737084 2737085 SMU_155 SMU_154 obg pdhD FALSE 0.228 -28.000 0.002 1.000   NA
 2737085 2737086 SMU_154 SMU_153 pdhD   FALSE 0.063 130.000 0.000 NA   NA
 2737091 2737092 SMU_160 SMU_159 lgt rplY FALSE 0.063 74.000 0.000 1.000   NA
 2737092 2737093 SMU_159 SMU_158 rplY prsA FALSE 0.598 -3.000 0.074 1.000 N NA
 2737093 2737094 SMU_158 SMU_157 prsA   FALSE 0.063 122.000 0.000 1.000   NA
 2737097 2737098 SMU_080 SMU_081 aspC rpmF FALSE 0.020 46.000 0.002 1.000 N NA
 2737100 2737101 SMU_010 SMU_077 rpoA rplQ TRUE 0.822 -22.000 0.873 NA   NA
 2737107 2737108 SMU_034 SMU_163 leuS korB FALSE 0.063 153.000 0.000 1.000   NA
 2737108 2737109 SMU_163 SMU_164 korB serS FALSE 0.020 -6.000 0.000 1.000 N NA
 2737110 2737111 SMU_091 SMU_013 dnaE trmE FALSE 0.063 123.000 0.000 0.023   NA
 2737112 2737113 SMU_165 SMU_166 rpmA rpsF FALSE 0.691 503.000 0.000 NA Y NA
 2737113 2737114 SMU_166 SMU_167 rpsF rpsR TRUE 0.953 11.000 0.319 NA Y NA
 2737116 2737117 SMU_086 SMU_087 prfA aroD FALSE 0.162 129.000 0.002 1.000   NA
 2737118 2737119 SMU_089 SMU_088 fabF acpP FALSE 0.063 -19.000 0.000 1.000   NA
 2737119 2737120 SMU_088 SMU_012 acpP   FALSE 0.063 12.000 0.000 1.000   NA
 2737123 2737124 SMU_162 SMU_161 thrC thrB TRUE 0.950 14.000 0.233 1.000 Y NA
 2737125 2737126 SMU_099 SMU_098 rpsO ubiE FALSE 0.020 10.000 0.002 NA N NA
 2737127 2737128 SMU_096 SMU_097 rpmE rpsL TRUE 0.816 71.000 0.003 NA Y NA
 2737132 2737133 SMU_037 SMU_170 lysA aroC FALSE 0.063 104.000 0.000 1.000   NA
 2737135 2737136 SMU_172 SMU_171 pdhA argH FALSE 0.063 133.000 0.000 1.000   NA
 2737136 2737137 SMU_171 SMU_039 argH   FALSE 0.063 18.000 0.000 1.000   NA
 2737143 2737144 SMU_015 SMU_100 rpoB rpoC TRUE 0.827 11.000 0.851 0.034   NA
 2737146 2737147 SMU_101 SMU_102 acpP fabF FALSE 0.063 -19.000 0.000 1.000   NA
 2737152 2737153 SMU_104 SMU_105 atpE atpF TRUE 0.860 25.000 0.402 0.023   NA
 2737154 2737155 SMU_179 SMU_173 lysC maeB FALSE 0.063 312.000 0.000 1.000   NA
 2737157 2737158 SMU_021 SMU_107 gidA glnS FALSE 0.063 6.000 0.000 1.000   NA
 2737163 2737164 SMU_030 SMU_127 rplK rplA TRUE 0.835 92.000 0.838 NA   NA