MicrobesOnline Operon Predictions for Helicobacter pylori J99

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 26859 26860 jhp0001 jhp0002 nusB ribE TRUE 0.933 2.000 0.045 1.000 N NA
 26860 26861 jhp0002 jhp0003 ribE kdsA TRUE 0.949 10.000 0.027 1.000 N NA
 26861 26862 jhp0003 jhp0004 kdsA icfA TRUE 0.922 -13.000 0.025 1.000 N NA
 26863 26864 jhp0005 jhp0006 pyrF panC TRUE 0.906 0.000 0.012 1.000 N NA
 3446250 3446251 jhp_t01 jhp_t02     FALSE 0.173 60.000 0.000 NA   NA
 3446251 3446252 jhp_t02 jhp_t03     FALSE 0.213 51.000 0.000 NA   NA
 3446252 3446253 jhp_t03 jhp_t04     FALSE 0.271 38.000 0.000 NA   NA
 3446253 3446254 jhp_t04 jhp_t05     TRUE 0.657 13.000 0.000 NA   NA
 3446254 26865 jhp_t05 jhp0007     FALSE 0.005 820.000 0.000 NA   NA
 26865 26866 jhp0007 jhp0008   groEL FALSE 0.012 315.000 0.000 NA   NA
 26866 26867 jhp0008 jhp0009 groEL groES TRUE 0.971 25.000 0.356 0.012 Y NA
 26868 26869 jhp0010 jhp0011 dnaG   TRUE 0.941 -3.000 0.035 1.000 N NA
 26869 26870 jhp0011 jhp0012     FALSE 0.278 90.000 0.012 NA   NA
 26870 26871 jhp0012 jhp0013     FALSE 0.335 147.000 0.235 NA   NA
 26871 26872 jhp0013 jhp0014     TRUE 0.978 0.000 1.000 NA   NA
 26872 26873 jhp0014 jhp0015   virB4_1 TRUE 0.975 2.000 1.000 NA   NA
 26873 26874 jhp0015 jhp0016 virB4_1   FALSE 0.017 240.000 0.000 NA   NA
 26874 26875 jhp0016 jhp0017   cheV_1 FALSE 0.386 107.000 0.071 NA   NA
 26875 26876 jhp0017 jhp0018 cheV_1 nspC TRUE 0.945 -3.000 0.042 1.000 N NA
 26877 26878 jhp0019 jhp0020     TRUE 0.977 11.000 0.429 1.000   NA
 26878 26879 jhp0020 jhp0021     FALSE 0.006 617.000 0.000 NA   NA
 26879 26880 jhp0021 jhp0022   gltA FALSE 0.005 705.000 0.000 NA   NA
 26881 26882 jhp0023 jhp0024 icd   FALSE 0.438 65.000 0.021 NA   NA
 26883 26884 jhp0025 jhp0026 bioD   TRUE 0.894 4.000 0.020 NA   NA
 26885 26886 jhp0027 jhp0028     TRUE 0.869 2.000 0.021 NA   NA
 26886 26887 jhp0028 jhp0029   clpA TRUE 0.970 0.000 0.596 NA   NA
 26887 26888 jhp0029 jhp0030 clpA panD TRUE 0.909 -10.000 0.014 1.000 N NA
 26888 26889 jhp0030 jhp0031 panD   TRUE 0.896 3.000 0.029 NA   NA
 26889 26890 jhp0031 jhp0032     TRUE 0.881 -3.000 0.017 NA   NA
 26890 26891 jhp0032 jhp0033     TRUE 0.981 8.000 0.533 1.000   NA
 26891 26892 jhp0033 jhp0034   comB1 TRUE 0.650 126.000 0.750 NA Y NA
 26892 26893 jhp0034 jhp0035 comB1 comB2 TRUE 0.985 0.000 1.000 NA Y NA
 26893 26894 jhp0035 jhp0036 comB2 comB3 TRUE 0.974 -7.000 0.375 NA Y NA
 26894 26895 jhp0036 jhp0037 comB3 manC TRUE 0.518 70.000 0.020 1.000 N NA
 26895 26896 jhp0037 jhp0038 manC gmd TRUE 0.800 41.000 0.054 1.000 Y NA
 26896 26897 jhp0038 jhp0039 gmd   TRUE 0.993 -7.000 0.381 0.007 Y NA
 26898 26899 jhp0040 jhp0041 hypE   TRUE 0.962 3.000 0.079 1.000 Y NA
 26899 26900 jhp0041 jhp0042     TRUE 0.912 -24.000 0.023 1.000 N NA
 26900 26901 jhp0042 jhp0043     TRUE 0.666 59.000 0.061 1.000 N NA
 26901 26902 jhp0043 jhp0044     TRUE 0.922 -22.000 0.000 0.023   NA
 26902 26903 jhp0044 jhp0045     FALSE 0.054 434.000 0.000 0.023   NA
 26903 26904 jhp0045 jhp0046     TRUE 0.733 10.000 0.000 NA   NA
 26904 26905 jhp0046 jhp0047   putP FALSE 0.008 428.000 0.000 NA   NA
 26905 26906 jhp0047 jhp0048 putP putA TRUE 0.863 27.000 0.141 1.000 N NA
 26907 26908 jhp0049 jhp0050     FALSE 0.011 328.000 0.000 NA   NA
 26908 26909 jhp0050 jhp0051     FALSE 0.056 130.000 0.000 NA   NA
 26909 26910 jhp0051 jhp0052     TRUE 0.634 1.000 0.000 NA   NA
 26910 26911 jhp0052 jhp0053     TRUE 0.706 11.000 0.000 NA   NA
 26911 26912 jhp0053 jhp0054     FALSE 0.032 181.000 0.000 NA   NA
 26912 26913 jhp0054 jhp0055     TRUE 0.634 1.000 0.000 NA   NA
 26913 26914 jhp0055 jhp0056     TRUE 0.675 -3.000 0.000 NA   NA
 26914 26915 jhp0056 jhp0057     TRUE 0.935 16.000 0.286 NA   NA
 26915 26916 jhp0057 jhp0058     TRUE 0.706 11.000 0.000 NA   NA
 26916 26917 jhp0058 jhp0059     TRUE 0.616 -30.000 0.000 NA   NA
 26917 26918 jhp0059 jhp0060     TRUE 0.966 2.000 0.636 NA   NA
 26918 26919 jhp0060 jhp0061     TRUE 0.970 -7.000 0.571 NA   NA
 26920 26921 jhp0062 jhp0063 ureH ureG TRUE 0.992 0.000 0.337 0.008 Y NA
 26921 26922 jhp0063 jhp0064 ureG ureF TRUE 0.971 29.000 0.439 0.008 Y NA
 26922 26923 jhp0064 jhp0065 ureF ureE TRUE 0.978 24.000 0.460 0.008 Y NA
 26923 26924 jhp0065 jhp0066 ureE ureI TRUE 0.942 2.000 0.096 1.000   NA
 26924 26925 jhp0066 jhp0067 ureI ureB FALSE 0.092 224.000 0.019 1.000   NA
 26925 26926 jhp0067 jhp0068 ureB ureA TRUE 0.989 4.000 0.045 0.003 Y NA
 26926 3446255 jhp0068 jhp_t06 ureA   FALSE 0.015 268.000 0.000 NA   NA
 3446255 26927 jhp_t06 jhp0069   lspA TRUE 0.706 11.000 0.000 NA   NA
 26927 26928 jhp0069 jhp0070 lspA glmM TRUE 0.943 -6.000 0.042 1.000 N NA
 26929 26930 jhp0071 jhp0072 rpsT prfA FALSE 0.419 119.000 0.029 1.000 Y NA
 26930 26931 jhp0072 jhp0073 prfA   FALSE 0.008 414.000 0.000 NA   NA
 26931 26932 jhp0073 jhp0074     FALSE 0.016 251.000 0.000 NA   NA
 26933 26934 jhp0075 jhp0076   rpsI FALSE 0.153 150.000 0.008 1.000 N NA
 26934 26935 jhp0076 jhp0077 rpsI rplM TRUE 0.989 -3.000 0.231 0.040 Y NA
 26935 26936 jhp0077 jhp0078 rplM   FALSE 0.010 352.000 0.000 NA   NA
 26936 26937 jhp0078 jhp0079     TRUE 0.964 7.000 0.216 NA   NA
 26937 26938 jhp0079 jhp0080     TRUE 0.648 54.000 0.096 NA   NA
 26938 26939 jhp0080 jhp0081   rpoD TRUE 0.750 20.000 0.017 NA   NA
 26939 26940 jhp0081 jhp0082 rpoD   FALSE 0.086 223.000 0.011 1.000 N NA
 26940 26941 jhp0082 jhp0083   fabD TRUE 0.929 14.000 0.037 1.000 N NA
 3446256 1937530 jhp_t07 jhp0084     FALSE 0.024 206.000 0.000 NA   NA
 1937530 26942 jhp0084 jhp0085     TRUE 0.675 -3.000 0.000 NA   NA
 26943 26944 jhp0086 jhp0087     TRUE 0.587 96.000 0.364 NA   NA
 26946 26947 jhp0089 jhp0090   thrC FALSE 0.227 104.000 0.012 NA   NA
 26948 26949 jhp0091 jhp0092     TRUE 0.890 0.000 0.024 NA   NA
 26949 26950 jhp0092 jhp0093     FALSE 0.057 217.000 0.010 NA   NA
 26951 26952 jhp0094 jhp0095     TRUE 0.898 32.000 0.700 NA N NA
 26952 26953 jhp0095 jhp0096   cpdB FALSE 0.045 216.000 0.000 1.000 N NA
 26953 26954 jhp0096 jhp0097 cpdB   FALSE 0.221 141.000 0.016 1.000 N NA
 26954 26955 jhp0097 jhp0098   metB TRUE 0.761 38.000 0.048 1.000 N NA
 26955 26956 jhp0098 jhp0099 metB cysK TRUE 0.978 25.000 0.690 0.015 Y NA
 26958 26959 jhp0101 jhp0102 dnaK grpE TRUE 0.923 30.000 0.029 0.012 Y NA
 26959 26960 jhp0102 jhp0103 grpE   TRUE 0.938 0.000 0.038 1.000 N NA
 26961 26962 jhp0104 jhp0105     TRUE 0.677 38.000 0.047 NA   NA
 26963 26964 jhp0106 jhp0107   flaB TRUE 0.841 48.000 0.700 NA   NA
 26965 26966 jhp0108 jhp0109 topA_1   TRUE 0.898 -7.000 0.010 1.000 N NA
 26967 26968 jhp0110 jhp0111   ppsA FALSE 0.187 99.000 0.007 NA   NA
 26969 26970 jhp0112 jhp0113   thrS TRUE 0.711 40.000 0.076 NA   NA
 26970 26971 jhp0113 jhp0114 thrS infC TRUE 0.962 -3.000 0.060 1.000 Y NA
 26971 26972 jhp0114 jhp0115 infC rpmI TRUE 0.981 -19.000 0.652 1.000 Y NA
 26972 26973 jhp0115 jhp0116 rpmI rplT TRUE 0.910 95.000 0.928 0.040 Y NA
 26973 26974 jhp0116 jhp0117 rplT   FALSE 0.051 200.000 0.007 NA   NA
 26974 26975 jhp0117 jhp0118     FALSE 0.007 480.000 0.000 NA   NA
 26975 26976 jhp0118 jhp0119     FALSE 0.008 412.000 0.000 NA   NA
 26977 26978 jhp0120 jhp0121 sdaB sdaC TRUE 0.978 0.000 0.350 1.000 Y NA
 26979 26980 jhp0122 jhp0123 aroF   FALSE 0.039 289.000 0.012 NA   NA
 26981 26982 jhp0124 jhp0125 bcp   TRUE 0.911 10.000 0.009 1.000   NA
 26982 26983 jhp0125 jhp0126     TRUE 0.988 -7.000 0.209 0.003   NA
 26983 26984 jhp0126 jhp0127     TRUE 0.935 29.000 0.657 1.000 Y NA
 26985 26986 jhp0128 jhp0129 lldP_1 lldP_2 TRUE 0.968 49.000 0.625 0.002 Y NA
 26987 26988 jhp0130 jhp0131 mutY   TRUE 0.873 1.000 0.008 1.000 N NA
 26989 26990 jhp0132 jhp0133 fixN fixO TRUE 0.990 13.000 0.283 0.004 N NA
 26990 26991 jhp0133 jhp0134 fixO fixQ TRUE 0.995 11.000 0.738 0.004 N NA
 26991 26992 jhp0134 jhp0135 fixQ fixP TRUE 0.989 2.000 0.262 0.004 N NA
 26992 26993 jhp0135 jhp0136 fixP   TRUE 0.706 11.000 0.000 NA   NA
 26993 26994 jhp0136 jhp0137     FALSE 0.091 101.000 0.000 NA   NA
 26994 26995 jhp0137 jhp0138     TRUE 0.964 13.000 0.438 NA   NA
 26995 26996 jhp0138 jhp0139     FALSE 0.073 612.000 0.429 NA   NA
 26998 26999 jhp0141 jhp0142 recA eno TRUE 0.942 12.000 0.033 1.000 N NA
 26999 27000 jhp0142 jhp0143 eno   TRUE 0.932 -7.000 0.080 NA   NA
 27000 27001 jhp0143 jhp0144     TRUE 0.954 17.000 0.788 NA   NA
 27001 27002 jhp0144 jhp0145   aroK TRUE 0.954 5.000 0.127 NA   NA
 27002 27003 jhp0145 jhp0146 aroK   TRUE 0.868 22.000 0.078 1.000   NA
 27006 27007 jhp0149 jhp0150   hemB TRUE 0.829 1.000 0.010 NA   NA
 27007 27008 jhp0150 jhp0151 hemB   TRUE 0.834 22.000 0.028 1.000 N NA
 27008 27009 jhp0151 jhp0152     TRUE 0.930 26.000 0.448 1.000 Y NA
 27009 27010 jhp0152 jhp0153     FALSE 0.009 408.000 0.000 NA   NA
 27010 27011 jhp0153 jhp0154     TRUE 0.947 -21.000 0.233 NA   NA
 27011 27012 jhp0154 jhp0155     TRUE 0.600 47.000 0.018 1.000   NA
 27012 27013 jhp0155 jhp0156     TRUE 0.926 3.000 0.068 NA   NA
 27013 27014 jhp0156 jhp0157   prfB FALSE 0.334 70.000 0.011 NA   NA
 27014 27015 jhp0157 jhp0158 prfB moeA FALSE 0.441 61.000 0.007 1.000 N NA
 27015 27016 jhp0158 jhp0159 moeA fliR TRUE 0.965 10.000 0.069 1.000 N NA
 27016 27017 jhp0159 jhp0160 fliR   TRUE 0.975 -6.000 0.069 0.070   NA
 27018 27019 jhp0161 jhp0162   fba TRUE 0.953 14.000 0.121 1.000 N NA
 27019 27020 jhp0162 jhp0163 fba efp TRUE 0.783 22.000 0.012 1.000 N NA
 27020 27021 jhp0163 jhp0164 efp   FALSE 0.013 547.000 0.000 1.000 N NA
 27021 27022 jhp0164 jhp0165     TRUE 0.969 -7.000 0.552 NA   NA
 27023 27024 jhp0166 jhp0167 neuB   TRUE 0.917 3.000 0.018 1.000 N NA
 27024 27025 jhp0167 jhp0168   lnt TRUE 0.927 -3.000 0.020 1.000 N NA
 27026 27027 jhp0169 jhp0170   lysS TRUE 0.938 10.000 0.023 1.000   NA
 27027 27028 jhp0170 jhp0171 lysS glyA TRUE 0.941 0.000 0.044 1.000 N NA
 27028 27029 jhp0171 jhp0172 glyA   TRUE 0.975 10.000 0.271 1.000   NA
 27029 27030 jhp0172 jhp0173     TRUE 0.889 22.000 0.258 NA   NA
 27033 27034 jhp0176 jhp0177   frdB TRUE 0.762 22.000 0.009 1.000 N NA
 27034 27035 jhp0177 jhp0178 frdB frdA TRUE 0.984 -7.000 0.025 0.003 Y NA
 27035 27036 jhp0178 jhp0179 frdA frdC TRUE 0.995 10.000 0.276 0.003 Y NA
 27037 27038 jhp0180 jhp0181 tpi fabI TRUE 0.985 10.000 0.071 0.041 N NA
 27038 27039 jhp0181 jhp0182 fabI lpxD TRUE 0.942 10.000 0.018 1.000 N NA
 27039 27040 jhp0182 jhp0183 lpxD metK FALSE 0.482 66.000 0.011 1.000 N NA
 27040 27041 jhp0183 jhp0184 metK ndk FALSE 0.462 67.000 0.010 1.000 N NA
 27041 27042 jhp0184 jhp0185 ndk   TRUE 0.726 25.000 0.033 NA   NA
 27042 27043 jhp0185 jhp0186   rpmF TRUE 0.853 16.000 0.032 NA   NA
 27043 27044 jhp0186 jhp0187 rpmF plsX TRUE 0.727 78.000 0.418 1.000   NA
 27044 27045 jhp0187 jhp0188 plsX fabH TRUE 0.954 24.000 0.058 0.009 Y NA
 27045 27046 jhp0188 jhp0189 fabH   TRUE 0.842 24.000 0.154 NA   NA
 27047 27048 jhp0190 jhp0191     FALSE 0.277 78.000 0.009 NA   NA
 27048 27049 jhp0191 jhp0192     FALSE 0.279 37.000 0.000 NA   NA
 27052 27053 jhp0195 jhp0196   htpG FALSE 0.269 104.000 0.010 1.000   NA
 27054 27055 jhp0197 jhp0198   dapE FALSE 0.031 448.000 0.013 1.000   NA
 27055 27056 jhp0198 jhp0199 dapE gidA TRUE 0.925 10.000 0.010 1.000 N NA
 27057 27058 jhp0200 jhp0201   cdsA TRUE 0.969 13.000 0.031 0.093 N NA
 27058 27059 jhp0201 jhp0202 cdsA   TRUE 0.890 1.000 0.002 1.000 Y NA
 27059 27060 jhp0202 jhp0203     FALSE 0.338 51.000 0.004 NA   NA
 27062 27063 jhp0205 jhp0206     FALSE 0.203 168.000 0.034 1.000   NA
 27063 27064 jhp0206 jhp0207     TRUE 0.867 22.000 0.056 1.000 N NA
 27064 27065 jhp0207 jhp0208     FALSE 0.155 164.000 0.015 1.000   NA
 27065 27066 jhp0208 jhp0209   radA FALSE 0.312 79.000 0.007 1.000   NA
 27066 27067 jhp0209 jhp0210 radA   FALSE 0.275 124.000 0.008 1.000 Y NA
 27068 27069 jhp0211 jhp0212     FALSE 0.021 218.000 0.000 NA   NA
 3446257 27071 jhp_t08 jhp0214   hopA FALSE 0.054 133.000 0.000 NA   NA
 27071 27072 jhp0214 jhp0215 hopA kdsB FALSE 0.084 194.000 0.016 NA   NA
 27073 27074 jhp0216 jhp0217     TRUE 0.931 16.000 0.258 NA   NA
 27074 27075 jhp0217 jhp0218     TRUE 0.933 22.000 0.763 NA   NA
 27075 27076 jhp0218 jhp0219     TRUE 0.951 0.000 0.211 NA   NA
 27077 27078 jhp0220 jhp0221     FALSE 0.507 111.000 0.167 1.000   NA
 27078 27079 jhp0221 jhp0222   hemC TRUE 0.868 0.000 0.008 1.000   NA
 27079 27080 jhp0222 jhp0223 hemC proS TRUE 0.917 11.000 0.010 1.000 N NA
 27080 27081 jhp0223 jhp0224 proS hemA TRUE 0.976 4.000 0.040 0.057 N NA
 27081 27082 jhp0224 jhp0225 hemA ispB TRUE 0.957 0.000 0.051 1.000 Y NA
 27082 27083 jhp0225 jhp0226 ispB   TRUE 0.909 10.000 0.017 NA   NA
 27083 27084 jhp0226 jhp0227     TRUE 0.958 -7.000 0.286 NA   NA
 27084 27085 jhp0227 jhp0228   napA TRUE 0.870 21.000 0.121 NA   NA
 27085 27086 jhp0228 jhp0229 napA   FALSE 0.048 208.000 0.000 1.000 N NA
 27086 27087 jhp0229 jhp0230     TRUE 0.966 -3.000 0.406 NA   NA
 27087 27088 jhp0230 jhp0231   flgI TRUE 0.971 -3.000 0.569 NA   NA
 27089 27090 jhp0232 jhp0233 deaD   TRUE 0.906 21.000 0.119 1.000 N NA
 27090 27091 jhp0233 jhp0234     TRUE 0.956 7.000 0.119 NA   NA
 27092 27093 jhp0235 jhp0236     TRUE 0.974 10.000 0.250 1.000   NA
 27093 3446258 jhp0236 jhp_t09     FALSE 0.080 112.000 0.000 NA   NA
 27094 27095 jhp0237 jhp0238     TRUE 0.966 13.000 0.500 NA   NA
 27095 27096 jhp0238 jhp0239   purA FALSE 0.210 99.000 0.009 NA   NA
 27096 27097 jhp0239 jhp0240 purA   TRUE 0.841 -3.000 0.009 NA   NA
 27097 27098 jhp0240 jhp0241     TRUE 0.936 -7.000 0.093 NA   NA
 27098 27099 jhp0241 jhp0242     TRUE 0.888 -3.000 0.010 1.000   NA
 27099 27100 jhp0242 jhp0243   xseA TRUE 0.901 13.000 0.011 1.000 N NA
 27101 27102 jhp0244 jhp0245     TRUE 0.978 -7.000 0.727 1.000   NA
 27103 27104 jhp0246 jhp0247     TRUE 0.953 -28.000 0.333 NA   NA
 27104 27105 jhp0247 jhp0248     TRUE 0.950 -3.000 0.156 NA   NA
 27105 27106 jhp0248 jhp0249   clpB TRUE 0.705 73.000 0.216 1.000 N NA
 27106 27107 jhp0249 jhp0250 clpB ccdA TRUE 0.809 57.000 0.216 1.000 Y NA
 27107 27108 jhp0250 jhp0251 ccdA pyrC_1 TRUE 0.936 10.000 0.014 1.000 N NA
 27108 27109 jhp0251 jhp0252 pyrC_1 orf1 TRUE 0.917 -15.000 0.011 1.000 Y NA
 27109 27110 jhp0252 jhp0253 orf1   FALSE 0.101 247.000 0.066 NA   NA
 27110 27111 jhp0253 jhp0254     TRUE 0.931 10.000 0.033 NA   NA
 27111 27112 jhp0254 jhp0255     TRUE 0.658 34.000 0.029 NA   NA
 27112 27113 jhp0255 jhp0256     TRUE 0.966 -7.000 0.462 NA   NA
 27113 27114 jhp0256 jhp0257     TRUE 0.977 -10.000 1.000 NA   NA
 27114 27115 jhp0257 jhp0258     TRUE 0.960 -3.000 0.276 NA   NA
 27115 27116 jhp0258 jhp0259     TRUE 0.884 17.000 0.087 NA   NA
 27116 27117 jhp0259 jhp0260     TRUE 0.608 37.000 0.022 NA   NA
 27117 27118 jhp0260 jhp0261     TRUE 0.756 -12.000 0.000 1.000   NA
 27118 27119 jhp0261 jhp0262     TRUE 0.714 57.000 0.139 1.000   NA
 27119 27120 jhp0262 jhp0263   gppA TRUE 0.986 10.000 0.806 1.000   NA
 27120 27121 jhp0263 jhp0264 gppA waaC TRUE 0.976 -3.000 0.429 1.000 N NA
 27121 27122 jhp0264 jhp0265 waaC waaM TRUE 0.976 -3.000 0.231 1.000 Y NA
 27124 27125 jhp0267 jhp0268   aroB TRUE 0.939 5.000 0.031 1.000   NA
 27125 27126 jhp0268 jhp0269 aroB   TRUE 0.939 -9.000 0.041 1.000 N NA
 27126 27127 jhp0269 jhp0270     TRUE 0.952 -3.000 0.063 1.000 N NA
 27127 27128 jhp0270 jhp0271   ftsH_1 TRUE 0.946 -13.000 0.067 1.000 N NA
 27128 27129 jhp0271 jhp0272 ftsH_1   TRUE 0.953 3.000 0.237 NA   NA
 27129 27130 jhp0272 jhp0273     TRUE 0.937 13.000 0.100 NA   NA
 27130 27131 jhp0273 jhp0274     TRUE 0.631 68.000 0.172 NA   NA
 27131 27132 jhp0274 jhp0275   lysA FALSE 0.495 48.000 0.008 1.000   NA
 27132 27133 jhp0275 jhp0276 lysA   TRUE 0.936 5.000 0.009 1.000 Y NA
 27133 27134 jhp0276 jhp0277     TRUE 0.918 13.000 0.053 NA   NA
 27134 27135 jhp0277 jhp0278   pabB TRUE 0.873 1.000 0.021 NA   NA
 27135 27136 jhp0278 jhp0279 pabB amiE FALSE 0.263 128.000 0.024 1.000   NA
 27138 27139 jhp0281 jhp0282 rplU rpmA TRUE 0.992 14.000 0.667 0.038 Y NA
 27139 27140 jhp0282 jhp0283 rpmA dppA FALSE 0.205 119.000 0.004 1.000 N NA
 27140 27141 jhp0283 jhp0284 dppA dppB TRUE 0.981 11.000 0.021 0.034 Y NA
 27141 1937531 jhp0284 jhp0285 dppB dppC TRUE 0.659 0.000 0.000 NA   NA
 1937531 27142 jhp0285 jhp0286 dppC dppD TRUE 0.682 12.000 0.000 NA   NA
 27142 27143 jhp0286 jhp0287 dppD dppF TRUE 0.985 -3.000 0.087 0.004   NA
 27143 27144 jhp0287 jhp0288 dppF   TRUE 0.735 20.000 0.008 1.000   NA
 27144 27145 jhp0288 jhp0289     FALSE 0.074 196.000 0.007 1.000   NA
 27145 27146 jhp0289 jhp0290     FALSE 0.015 266.000 0.000 NA   NA
 27146 27147 jhp0290 jhp0291   hemL TRUE 0.961 10.000 0.154 NA   NA
 27147 27148 jhp0291 jhp0292 hemL   TRUE 0.964 -10.000 0.462 NA   NA
 27148 27149 jhp0292 jhp0293     TRUE 0.937 16.000 0.308 NA   NA
 27149 27150 jhp0293 jhp0294     TRUE 0.736 84.000 0.800 NA   NA
 27150 27151 jhp0294 jhp0295     TRUE 0.989 13.000 0.276 0.005   NA
 27151 27152 jhp0295 jhp0296     TRUE 0.828 46.000 0.517 NA   NA
 27152 27153 jhp0296 jhp0297     TRUE 0.974 0.000 0.788 NA   NA
 27154 27155 jhp0298 jhp0299     FALSE 0.040 201.000 0.000 1.000   NA
 27155 27156 jhp0299 jhp0300     TRUE 0.968 0.000 0.333 1.000   NA
 27156 27157 jhp0300 jhp0301     FALSE 0.012 573.000 0.000 1.000 N NA
 27157 27158 jhp0301 jhp0302   argS FALSE 0.046 277.000 0.004 1.000 N NA
 27158 27159 jhp0302 jhp0303 argS   TRUE 0.919 3.000 0.020 1.000 N NA
 27159 27160 jhp0303 jhp0304   gmk FALSE 0.443 72.000 0.011 1.000 N NA
 27160 27161 jhp0304 jhp0305 gmk   TRUE 0.796 -7.000 0.005 NA   NA
 27164 1937532 jhp0308 jhp0309 flgH neuA FALSE 0.371 24.000 0.000 NA   NA
 1937532 27165 jhp0309 jhp0310 neuA flaG TRUE 0.675 -3.000 0.000 NA   NA
 27166 27167 jhp0311 jhp0312 lpxK nadE TRUE 0.931 -3.000 0.024 1.000 N NA
 3446259 27168 jhp_t10 jhp0313   ilvC FALSE 0.116 88.000 0.000 NA   NA
 27168 27169 jhp0313 jhp0314 ilvC minD TRUE 0.728 25.000 0.012 1.000 N NA
 27169 27170 jhp0314 jhp0315 minD minE TRUE 0.981 -3.000 0.618 NA Y NA
 27170 27171 jhp0315 jhp0316 minE   TRUE 0.876 12.000 0.010 NA N NA
 27171 27172 jhp0316 jhp0317     TRUE 0.949 -3.000 0.026 1.000 Y NA
 27172 27173 jhp0317 jhp0318     FALSE 0.044 259.000 0.005 1.000   NA
 27173 27174 jhp0318 jhp0319     FALSE 0.315 185.000 0.500 NA   NA
 27174 27175 jhp0319 jhp0320     TRUE 0.975 -16.000 1.000 NA   NA
 27176 27177 jhp0321 jhp0322   recJ TRUE 0.897 0.000 0.010 1.000 N NA
 27177 27178 jhp0322 jhp0323 recJ pyrG TRUE 0.948 10.000 0.026 1.000 N NA
 27179 27180 jhp0324 jhp0325   fliF TRUE 0.672 44.000 0.032 1.000   NA
 27180 27181 jhp0325 jhp0326 fliF fliG TRUE 0.987 17.000 0.477 0.015 Y NA
 27181 27182 jhp0326 jhp0327 fliG fliH TRUE 0.991 -13.000 0.308 0.008 Y NA
 27182 27183 jhp0327 jhp0328 fliH dxs TRUE 0.948 -3.000 0.052 1.000 N NA
 27183 27184 jhp0328 jhp0329 dxs lepA TRUE 0.889 -3.000 0.008 1.000 N NA
 27184 27185 jhp0329 jhp0330 lepA   TRUE 0.749 15.000 0.007 NA   NA
 27185 27186 jhp0330 jhp0331     TRUE 0.943 -57.000 0.250 NA   NA
 27186 27187 jhp0331 jhp0332     FALSE 0.302 32.000 0.000 NA   NA
 27188 27189 jhp0333 jhp0334 flgG_1 kgtP TRUE 0.689 56.000 0.066 1.000 N NA
 27189 27190 jhp0334 jhp0335 kgtP ftsK FALSE 0.054 386.000 0.000 0.067 N NA
 27190 27191 jhp0335 jhp0336 ftsK   TRUE 0.981 -3.000 0.096 0.072 N NA
 27191 27192 jhp0336 jhp0337   tktA TRUE 0.965 -3.000 0.169 1.000 N NA
 27192 27193 jhp0337 jhp0338 tktA ribF TRUE 0.611 47.000 0.013 1.000 N NA
 27193 27194 jhp0338 jhp0339 ribF hlyA TRUE 0.900 -34.000 0.018 1.000 N NA
 27194 27195 jhp0339 jhp0340 hlyA   TRUE 0.870 0.000 0.016 NA   NA
 27196 27197 jhp0341 jhp0342 pyrB   FALSE 0.026 257.000 0.000 1.000   NA
 27197 27198 jhp0342 jhp0343   msbA FALSE 0.394 91.000 0.020 1.000   NA
 27198 27199 jhp0343 jhp0344 msbA   TRUE 0.885 -6.000 0.020 NA   NA
 27199 27200 jhp0344 jhp0345     TRUE 0.939 4.000 0.072 NA   NA
 27200 27201 jhp0345 jhp0346     FALSE 0.305 133.000 0.054 1.000   NA
 27201 27202 jhp0346 jhp0347     FALSE 0.381 186.000 0.833 NA   NA
 27202 27203 jhp0347 jhp0348   nixA TRUE 0.616 58.000 0.090 NA   NA
 27206 27207 jhp0351 jhp0352   copP FALSE 0.217 199.000 0.250 NA   NA
 27207 27208 jhp0352 jhp0353 copP copA TRUE 0.996 1.000 0.875 0.002 Y NA
 27208 27209 jhp0353 jhp0354 copA pssA TRUE 0.913 -3.000 0.013 1.000 N NA
 27209 27210 jhp0354 jhp0355 pssA   TRUE 0.829 -10.000 0.009 NA   NA
 27210 27211 jhp0355 jhp0356   ftsH_2 TRUE 0.937 3.000 0.109 NA   NA
 27211 27212 jhp0356 jhp0357 ftsH_2 prmA TRUE 0.952 9.000 0.032 1.000 N NA
 27212 27213 jhp0357 jhp0358 prmA cheY TRUE 0.925 1.000 0.029 1.000 N NA
 3446260 27215 jhp_t11 jhp0360     FALSE 0.248 43.000 0.000 NA   NA
 27215 27216 jhp0360 jhp0361     TRUE 0.923 3.000 0.062 NA   NA
 27216 27217 jhp0361 jhp0362   gidB TRUE 0.733 -57.000 0.002 NA   NA
 27217 27218 jhp0362 jhp0363 gidB queA TRUE 0.918 -3.000 0.015 1.000 N NA
 27218 27219 jhp0363 jhp0364 queA   TRUE 0.912 1.000 0.036 NA N NA
 27219 27220 jhp0364 jhp0365     TRUE 0.978 -7.000 0.535 NA Y NA
 27220 27221 jhp0365 jhp0366   ruvB FALSE 0.432 67.000 0.008 1.000 N NA
 27221 27222 jhp0366 jhp0367 ruvB panB TRUE 0.922 1.000 0.027 1.000 N NA
 27223 27224 jhp0368 jhp0369     TRUE 0.970 -22.000 0.778 NA   NA
 27224 27225 jhp0369 jhp0370     TRUE 0.980 12.000 1.000 NA   NA
 27225 27226 jhp0370 jhp0371     TRUE 0.969 10.000 0.273 NA   NA
 27226 27227 jhp0371 jhp0372     TRUE 0.911 3.000 0.030 NA N NA
 27227 27228 jhp0372 jhp0373   lpxC TRUE 0.934 -3.000 0.027 1.000 N NA
 27228 27229 jhp0373 jhp0374 lpxC   TRUE 0.812 22.000 0.035 NA N NA
 27229 27230 jhp0374 jhp0375   thrB TRUE 0.578 54.000 0.032 NA N NA
 27230 27231 jhp0375 jhp0376 thrB   TRUE 0.912 -28.000 0.044 NA N NA
 27231 27232 jhp0376 jhp0377   infB TRUE 0.957 -3.000 0.171 NA N NA
 27232 27233 jhp0377 jhp0378 infB rbfA TRUE 0.982 0.000 0.530 1.000 Y NA
 27233 27234 jhp0378 jhp0379 rbfA   TRUE 0.905 -7.000 0.033 NA   NA
 27234 27235 jhp0379 jhp0380     FALSE 0.070 161.000 0.002 NA   NA
 27235 27236 jhp0380 jhp0381     FALSE 0.017 353.000 0.000 1.000   NA
 27237 27238 jhp0382 jhp0383   flhA TRUE 0.809 34.000 0.106 1.000   NA
 27239 27240 jhp0384 jhp0385 rpsO   FALSE 0.374 56.000 0.007 NA N NA
 27240 27241 jhp0385 jhp0386   aroD FALSE 0.247 113.000 0.014 NA N NA
 27241 27242 jhp0386 jhp0387 aroD pepQ TRUE 0.971 13.000 0.168 1.000 Y NA
 27242 27243 jhp0387 jhp0388 pepQ folK TRUE 0.940 -3.000 0.033 1.000 N NA
 27243 27244 jhp0388 jhp0389 folK flhF TRUE 0.941 -3.000 0.035 1.000 N NA
 27244 27245 jhp0389 jhp0390 flhF   TRUE 0.975 -3.000 0.382 1.000 N NA
 27247 27248 jhp0392 jhp0393 fliA fliM TRUE 0.959 -7.000 0.118 1.000 N NA
 27248 27249 jhp0393 jhp0394 fliM   TRUE 0.992 4.000 0.142 0.003 Y NA
 27249 27250 jhp0394 jhp0395     TRUE 0.826 30.000 0.170 NA N NA
 27250 27251 jhp0395 jhp0396     TRUE 0.966 -3.000 0.421 NA   NA
 27252 27253 jhp0397 jhp0398 fur   FALSE 0.156 160.000 0.009 1.000 N NA
 27253 27254 jhp0398 jhp0399     TRUE 0.974 -3.000 0.013 0.006 N NA
 27254 27255 jhp0399 jhp0400   dnaJ_1 TRUE 0.976 10.000 0.211 1.000 N NA
 27257 27258 jhp0402 jhp0403     FALSE 0.117 221.000 0.000 0.070 N NA
 27258 27259 jhp0403 jhp0404     TRUE 0.608 22.000 0.000 1.000 N NA
 27259 27260 jhp0404 jhp0405   htrA TRUE 0.777 22.000 0.011 1.000 N NA
 27260 27261 jhp0405 jhp0406 htrA   TRUE 0.820 45.000 0.206 1.000 N NA
 27261 27262 jhp0406 jhp0407   pgsA FALSE 0.189 196.000 0.003 0.066 N NA
 27262 27263 jhp0407 jhp0408 pgsA   TRUE 0.797 -66.000 0.009 NA   NA
 27263 27264 jhp0408 jhp0409     TRUE 0.960 10.000 0.132 NA   NA
 27264 27265 jhp0409 jhp0410   dapA TRUE 0.970 -3.000 0.238 1.000 N NA
 27265 27266 jhp0410 jhp0411 dapA   TRUE 0.956 14.000 0.217 1.000   NA
 27266 27267 jhp0411 jhp0412   pyrD TRUE 0.939 -3.000 0.048 1.000   NA
 27267 27268 jhp0412 jhp0413 pyrD ppk TRUE 0.645 39.000 0.013 1.000 N NA
 27268 3446261 jhp0413 jhp_t12 ppk   FALSE 0.103 94.000 0.000 NA   NA
 3446261 27269 jhp_t12 jhp0414   hsdS_1a FALSE 0.007 477.000 0.000 NA   NA
 27269 27270 jhp0414 jhp0415 hsdS_1a hsdM_1 TRUE 0.986 -7.000 0.150 0.070 Y NA
 27270 1937533 jhp0415 jhp0416 hsdM_1 hsdR_1 TRUE 0.661 -7.000 0.000 NA   NA
 1937533 27271 jhp0416 jhp0417 hsdR_1   FALSE 0.005 674.000 0.000 NA   NA
 27271 27272 jhp0417 jhp0418     TRUE 0.697 25.000 0.025 NA   NA
 27272 27273 jhp0418 jhp0419     TRUE 0.936 10.000 0.040 NA   NA
 27273 27274 jhp0419 jhp0420     TRUE 0.960 -31.000 0.500 NA   NA
 27274 27275 jhp0420 jhp0421     TRUE 0.963 12.000 0.294 NA   NA
 27275 27276 jhp0421 jhp0422   pepF TRUE 0.933 -15.000 0.115 NA   NA
 27276 27277 jhp0422 jhp0423 pepF kefB FALSE 0.423 98.000 0.028 1.000 N NA
 27277 27278 jhp0423 jhp0424 kefB   FALSE 0.012 319.000 0.000 NA   NA
 27279 27280 jhp0425 jhp0426 modA modB TRUE 0.987 22.000 0.660 0.002 Y NA
 27280 27281 jhp0426 jhp0427 modB modC TRUE 0.978 -3.000 0.286 1.000 Y NA
 27283 27284 jhp0429 jhp0430     TRUE 0.983 9.000 0.875 NA   NA
 27284 27285 jhp0430 jhp0431     TRUE 0.962 -34.000 0.273 1.000 N NA
 27285 27286 jhp0431 jhp0432     TRUE 0.549 46.000 0.008 1.000 N NA
 27286 27287 jhp0432 jhp0433     TRUE 0.826 16.000 0.008 1.000 N NA
 27287 27288 jhp0433 jhp0434     TRUE 0.942 3.000 0.136 NA   NA
 27288 27289 jhp0434 jhp0435     FALSE 0.031 182.000 0.000 NA   NA
 27289 27290 jhp0435 jhp0436     FALSE 0.027 191.000 0.000 NA   NA
 27292 27293 jhp0438 jhp0439     TRUE 0.922 72.000 0.875 0.015   NA
 27293 27294 jhp0439 jhp0440     FALSE 0.006 515.000 0.000 NA   NA
 27294 27295 jhp0440 jhp0441     FALSE 0.152 69.000 0.000 NA   NA
 27296 27297 jhp0442 jhp0443   rpmB FALSE 0.160 187.000 0.025 1.000 N NA
 27297 27298 jhp0443 jhp0444 rpmB   FALSE 0.256 100.000 0.008 1.000   NA
 27299 27300 jhp0445 jhp0446 mraY murD TRUE 0.993 2.000 0.647 0.008 Y NA
 27301 27302 jhp0447 jhp0448     TRUE 0.911 -10.000 0.043 NA   NA
 27303 27304 jhp0449 jhp0450     TRUE 0.995 11.000 0.800 0.002   NA
 27304 27305 jhp0450 jhp0451   pldA TRUE 0.946 15.000 0.184 1.000   NA
 27305 27306 jhp0451 jhp0452 pldA dnaN FALSE 0.449 58.000 0.007 1.000 N NA
 27306 27307 jhp0452 jhp0453 dnaN gyrB TRUE 0.967 13.000 0.114 1.000 Y NA
 27307 27308 jhp0453 jhp0454 gyrB   TRUE 0.896 7.000 0.008 1.000   NA
 27308 27309 jhp0454 jhp0455     TRUE 0.966 -13.000 0.545 NA   NA
 27309 27310 jhp0455 jhp0456     FALSE 0.022 215.000 0.000 NA   NA
 27310 27311 jhp0456 jhp0457     TRUE 0.969 0.000 0.269 1.000 N NA
 27311 27312 jhp0457 jhp0458     TRUE 0.706 11.000 0.000 NA   NA
 27312 27313 jhp0458 jhp0459   glcD TRUE 0.710 5.000 0.000 NA   NA
 27313 27314 jhp0459 jhp0460 glcD dapB TRUE 0.727 23.000 0.009 1.000 N NA
 27316 27317 jhp0462 jhp0463   rplI FALSE 0.286 63.000 0.005 NA   NA
 27317 27318 jhp0463 jhp0464 rplI hslV TRUE 0.944 4.000 0.034 1.000 N NA
 27318 27319 jhp0464 jhp0465 hslV hslU TRUE 0.985 0.000 0.752 1.000 Y NA
 27319 27320 jhp0465 jhp0466 hslU era TRUE 0.936 0.000 0.051 1.000   NA
 27320 27321 jhp0466 jhp0467 era   TRUE 0.946 -3.000 0.125 NA   NA
 27323 27324 jhp0469 jhp0470 orf6 orf7 FALSE 0.048 143.000 0.000 NA   NA
 27324 27325 jhp0470 jhp0471 orf7 orf8 TRUE 0.964 -7.000 0.429 NA   NA
 27325 27326 jhp0471 jhp0472 orf8 orf9 TRUE 0.982 10.000 0.778 NA   NA
 27327 27328 jhp0473 jhp0474 virD4 virB11_1 TRUE 0.986 9.000 0.429 1.000 Y NA
 27328 27329 jhp0474 jhp0475 virB11_1 orf12 TRUE 0.976 5.000 0.583 NA   NA
 27329 27330 jhp0475 jhp0476 orf12 orf13/14 FALSE 0.390 135.000 0.286 NA   NA
 27330 27331 jhp0476 jhp0477 orf13/14 orf15 TRUE 0.949 15.000 0.150 1.000 N NA
 27331 27332 jhp0477 jhp0478 orf15 orf16 TRUE 0.693 53.000 0.150 NA   NA
 27332 27333 jhp0478 jhp0479 orf16 orf17 TRUE 0.972 5.000 0.444 NA   NA
 27334 27335 jhp0480 jhp0481 orf18 cagT FALSE 0.284 36.000 0.000 NA   NA
 27336 27337 jhp0482 jhp0483 cagS cagQ FALSE 0.008 439.000 0.000 NA   NA
 27337 27338 jhp0483 jhp0484 cagQ cagP FALSE 0.008 427.000 0.000 NA   NA
 27339 27340 jhp0485 jhp0486 cagM cagN TRUE 0.971 15.000 1.000 NA   NA
 27341 27342 jhp0487 jhp0488 cagL cagI TRUE 0.675 -3.000 0.000 NA   NA
 27342 27343 jhp0488 jhp0489 cagI cagH TRUE 0.981 11.000 0.857 NA   NA
 27343 27344 jhp0489 jhp0490 cagH cagG TRUE 0.929 17.000 0.333 NA   NA
 27344 27345 jhp0490 jhp0491 cagG cagF TRUE 0.780 55.000 0.500 NA   NA
 27345 27346 jhp0491 jhp0492 cagF cagE TRUE 0.946 2.000 0.231 NA   NA
 27346 27347 jhp0492 jhp0493 cagE cagD TRUE 0.966 9.000 0.231 NA   NA
 27347 27348 jhp0493 jhp0494 cagD cagC TRUE 0.975 2.000 1.000 NA   NA
 27350 27351 jhp0496 jhp0497 murI rho TRUE 0.692 40.000 0.023 1.000 N NA
 27352 27353 jhp0498 jhp0499 rpmE   TRUE 0.786 24.000 0.031 1.000   NA
 27353 27354 jhp0499 jhp0500     TRUE 0.912 14.000 0.031 1.000   NA
 27354 27355 jhp0500 jhp0501     TRUE 0.903 13.000 0.033 NA   NA
 27355 27356 jhp0501 jhp0502     TRUE 0.979 -3.000 0.882 NA   NA
 27357 27358 jhp0503 jhp0504   accA FALSE 0.007 482.000 0.000 NA   NA
 27358 27359 jhp0504 jhp0505 accA fabB TRUE 0.890 22.000 0.046 1.000 Y NA
 27359 27360 jhp0505 jhp0506 fabB acpP TRUE 0.556 103.000 0.066 1.000 Y NA
 27360 27361 jhp0506 jhp0507 acpP   FALSE 0.327 53.000 0.004 NA   NA
 27361 27362 jhp0507 jhp0508   fabG FALSE 0.173 98.000 0.005 NA   NA
 27362 27363 jhp0508 jhp0509 fabG rpsU TRUE 0.636 39.000 0.017 1.000   NA
 27363 27364 jhp0509 jhp0510 rpsU   FALSE 0.477 101.000 0.154 NA   NA
 27366 27367 jhp0512 jhp0513   dapF FALSE 0.178 113.000 0.009 NA   NA
 27369 27370 jhp0515 jhp0516     FALSE 0.110 144.000 0.009 NA   NA
 27370 27371 jhp0516 jhp0517   pepA TRUE 0.918 2.000 0.026 1.000 N NA
 27371 27372 jhp0517 jhp0518 pepA   TRUE 0.763 48.000 0.250 NA   NA
 27372 27373 jhp0518 jhp0519   apt TRUE 0.860 15.000 0.026 NA   NA
 27373 27374 jhp0519 jhp0520 apt   FALSE 0.482 61.000 0.028 NA   NA
 27374 27375 jhp0520 jhp0521   rpi TRUE 0.757 51.000 0.277 NA   NA
 27375 27376 jhp0521 jhp0522 rpi   TRUE 0.864 19.000 0.042 1.000   NA
 27376 27377 jhp0522 jhp0523   lepB TRUE 0.983 9.000 0.055 0.025   NA
 27377 27378 jhp0523 jhp0524 lepB folD TRUE 0.958 0.000 0.117 1.000 N NA
 27378 27379 jhp0524 jhp0525 folD   FALSE 0.471 86.000 0.025 1.000 N NA
 27379 27380 jhp0525 jhp0526     TRUE 0.980 9.000 0.727 NA   NA
 27380 27381 jhp0526 jhp0527     TRUE 0.964 7.000 0.216 NA   NA
 27381 27382 jhp0527 jhp0528   pyrC_2 TRUE 0.904 -24.000 0.018 1.000 N NA
 27382 27383 jhp0528 jhp0529 pyrC_2 tonB_1 TRUE 0.930 5.000 0.015 1.000 N NA
 27383 27384 jhp0529 jhp0530 tonB_1   TRUE 0.955 -16.000 0.333 NA   NA
 27384 27385 jhp0530 jhp0531   fliN TRUE 0.960 -3.000 0.281 NA   NA
 27385 27386 jhp0531 jhp0532 fliN nth FALSE 0.373 82.000 0.009 1.000 N NA
 27386 27387 jhp0532 jhp0533 nth   TRUE 0.907 -3.000 0.011 1.000 N NA
 27387 27388 jhp0533 jhp0534     TRUE 0.962 -3.000 0.303 NA   NA
 27389 27390 jhp0535 jhp0536   oorD FALSE 0.084 185.000 0.012 NA   NA
 27390 27391 jhp0536 jhp0537 oorD oorA TRUE 0.993 0.000 0.316 0.003 Y NA
 27391 27392 jhp0537 jhp0538 oorA oorB TRUE 0.995 2.000 0.771 0.003 Y NA
 27392 27393 jhp0538 jhp0539 oorB oorC TRUE 0.993 0.000 0.324 0.003 Y NA
 27393 27394 jhp0539 jhp0540 oorC   FALSE 0.120 114.000 0.000 1.000   NA
 27394 27395 jhp0540 jhp0541     FALSE 0.041 159.000 0.000 NA   NA
 27395 27396 jhp0541 jhp0542     TRUE 0.980 10.000 0.667 NA   NA
 27396 27397 jhp0542 jhp0543     FALSE 0.007 469.000 0.000 NA   NA
 27398 27399 jhp0544 jhp0545   bioF TRUE 0.944 0.000 0.050 1.000 N NA
 27399 27400 jhp0545 jhp0546 bioF   TRUE 0.830 23.000 0.033 1.000 N NA
 27400 27401 jhp0546 jhp0547     TRUE 0.625 72.000 0.069 1.000 N NA
 27402 27403 jhp0548 jhp0549 flaA   FALSE 0.389 118.000 0.042 1.000 N NA
 27403 27404 jhp0549 jhp0550     TRUE 0.918 -3.000 0.042 NA   NA
 27404 27405 jhp0550 jhp0551   hemE FALSE 0.328 69.000 0.010 NA   NA
 27405 27406 jhp0551 jhp0552 hemE   TRUE 0.925 10.000 0.010 1.000 N NA
 27406 27407 jhp0552 jhp0553     TRUE 0.983 11.000 0.655 1.000 N NA
 27407 27408 jhp0553 jhp0554     TRUE 0.986 13.000 0.844 1.000 Y NA
 27408 27409 jhp0554 jhp0555     TRUE 0.985 -3.000 0.281 0.063   NA
 27409 27410 jhp0555 jhp0556     TRUE 0.691 163.000 0.600 0.015   NA
 27411 27412 jhp0557 jhp0558   lig FALSE 0.101 173.000 0.008 1.000   NA
 27413 27414 jhp0559 jhp0560 cheV_2 aspS TRUE 0.653 35.000 0.010 1.000 N NA
 27414 27415 jhp0560 jhp0561 aspS adk TRUE 0.934 12.000 0.025 1.000 N NA
 27415 27416 jhp0561 jhp0562 adk   TRUE 0.864 25.000 0.114 1.000 N NA
 27416 27417 jhp0562 jhp0563     TRUE 0.881 19.000 0.000 0.008   NA
 27417 27418 jhp0563 jhp0564   ppa FALSE 0.501 56.000 0.013 1.000   NA
 27419 27420 jhp0565 jhp0566 mutS   TRUE 0.858 -39.000 0.021 NA   NA
 27420 27421 jhp0566 jhp0567   murC TRUE 0.859 0.000 0.013 NA   NA
 27421 27422 jhp0567 jhp0568 murC   TRUE 0.915 -7.000 0.016 1.000 N NA
 27423 27424 jhp0569 jhp0570   dapD TRUE 0.892 3.000 0.009 1.000 N NA
 27424 27425 jhp0570 jhp0571 dapD   TRUE 0.962 12.000 0.164 1.000   NA
 27425 27426 jhp0571 jhp0572     FALSE 0.148 213.000 0.100 NA   NA
 27428 27429 jhp0574 jhp0575 hyaA hyaB TRUE 0.997 10.000 0.951 0.002 Y NA
 27429 27430 jhp0575 jhp0576 hyaB hyaC TRUE 0.990 13.000 0.270 0.038 Y NA
 27430 27431 jhp0576 jhp0577 hyaC hyaD TRUE 0.978 -3.000 0.277 1.000 Y NA
 27431 27432 jhp0577 jhp0578 hyaD   TRUE 0.940 2.000 0.171 NA   NA
 27433 27434 jhp0579 jhp0580     TRUE 0.638 119.000 1.000 NA   NA
 27437 27438 jhp0583 jhp0584 pcnB   TRUE 0.727 21.000 0.014 NA   NA
 27438 27439 jhp0584 jhp0585     TRUE 0.923 15.000 0.121 NA   NA
 27439 27440 jhp0585 jhp0586     TRUE 0.959 2.000 0.185 1.000 N NA
 27442 27443 jhp0588 jhp0589 gltX_2   TRUE 0.952 -3.000 0.088 1.000   NA
 27443 27444 jhp0589 jhp0590     TRUE 0.950 9.000 0.080 NA   NA
 27444 27445 jhp0590 jhp0591   galU TRUE 0.974 -3.000 0.323 NA Y NA
 27445 27446 jhp0591 jhp0592 galU   TRUE 0.971 12.000 0.533 NA   NA
 27446 27447 jhp0592 jhp0593   murA TRUE 0.872 3.000 0.017 NA   NA
 27447 27448 jhp0593 jhp0594 murA aspA TRUE 0.565 58.000 0.020 1.000 N NA
 27448 27449 jhp0594 jhp0595 aspA   TRUE 0.962 6.000 0.071 1.000 N NA
 27450 27451 jhp0596 jhp0597 fucT serB TRUE 0.563 38.000 0.009 1.000   NA
 27451 27452 jhp0597 jhp0598 serB pfr TRUE 0.882 15.000 0.014 1.000 N NA
 27453 27454 jhp0599 jhp0600     FALSE 0.450 83.000 0.018 1.000 N NA
 27454 27455 jhp0600 jhp0601     TRUE 0.926 2.000 0.033 1.000 N NA
 27455 27456 jhp0601 jhp0602     TRUE 0.965 6.000 0.130 1.000   NA
 27456 27457 jhp0602 jhp0603   gatB TRUE 0.879 0.000 0.010 1.000   NA
 27457 27458 jhp0603 jhp0604 gatB   TRUE 0.869 0.000 0.008 1.000   NA
 27458 27459 jhp0604 jhp0605     TRUE 0.977 10.000 0.308 1.000   NA
 27459 27460 jhp0605 jhp0606   rnhA TRUE 0.832 2.000 0.006 1.000   NA
 27460 27461 jhp0606 jhp0607 rnhA rnc TRUE 0.940 12.000 0.032 1.000 N NA
 27461 27462 jhp0607 jhp0608 rnc aroC TRUE 0.937 -3.000 0.030 1.000 N NA
 27462 27463 jhp0608 jhp0609 aroC   FALSE 0.464 37.000 0.008 NA   NA
 27463 27464 jhp0609 jhp0610   hemN_1 TRUE 0.963 0.000 0.419 NA   NA
 27464 27465 jhp0610 jhp0611 hemN_1 glpC TRUE 0.991 -3.000 0.419 0.019 N NA
 27465 27466 jhp0611 jhp0612 glpC   TRUE 0.583 78.000 0.074 1.000   NA
 27466 27467 jhp0612 jhp0613     TRUE 0.738 2.000 0.000 1.000   NA
 27467 27468 jhp0613 jhp0614     FALSE 0.016 249.000 0.000 NA   NA
 27468 27469 jhp0614 jhp0615   aspB FALSE 0.230 160.000 0.082 NA   NA
 27469 27470 jhp0615 jhp0616 aspB   FALSE 0.172 167.000 0.041 NA   NA
 27470 27471 jhp0616 jhp0617     TRUE 0.908 15.000 0.071 NA   NA
 27472 27473 jhp0618 jhp0619 ogt   TRUE 0.937 0.000 0.054 1.000   NA
 27473 27474 jhp0619 jhp0620     FALSE 0.336 125.000 0.047 1.000   NA
 27474 27475 jhp0620 jhp0621   nrdA TRUE 0.612 62.000 0.054 1.000   NA
 27475 27476 jhp0621 jhp0622 nrdA   FALSE 0.222 172.000 0.114 NA   NA
 27476 27477 jhp0622 jhp0623     TRUE 0.815 40.000 0.333 NA   NA
 27477 27478 jhp0623 jhp0624   glmU FALSE 0.047 192.000 0.002 NA   NA
 27480 27481 jhp0626 jhp0627 fecA_1 feoB FALSE 0.049 256.000 0.000 1.000 Y NA
 27482 27483 jhp0628 jhp0629     TRUE 0.685 53.000 0.024 1.000 Y NA
 27483 27484 jhp0629 jhp0630     TRUE 0.959 3.000 0.333 NA   NA
 27485 27486 jhp0631 jhp0632     TRUE 0.949 24.000 0.882 NA Y NA
 27486 27487 jhp0632 jhp0633     TRUE 0.874 12.000 0.000 1.000 Y NA
 27487 27488 jhp0633 jhp0634     FALSE 0.018 231.000 0.000 NA   NA
 27488 27489 jhp0634 jhp0635   atoE FALSE 0.440 129.000 0.348 NA   NA
 27489 27490 jhp0635 jhp0636 atoE scoB TRUE 0.919 20.000 0.074 1.000 Y NA
 27490 27491 jhp0636 jhp0637 scoB scoA TRUE 0.991 -3.000 0.083 0.002 Y NA
 27491 27492 jhp0637 jhp0638 scoA thl TRUE 0.984 11.000 0.429 1.000 Y NA
 27493 27494 jhp0639 jhp0640   dgkA TRUE 0.969 -7.000 0.562 NA   NA
 27494 27495 jhp0640 jhp0641 dgkA gyrA TRUE 0.837 16.000 0.009 1.000 N NA
 27495 27496 jhp0641 jhp0642 gyrA   TRUE 0.852 0.000 0.012 NA   NA
 27496 27497 jhp0642 jhp0643     TRUE 0.960 -3.000 0.282 NA   NA
 27499 27500 jhp0645 jhp0646 hopE   FALSE 0.078 172.000 0.008 NA   NA
 27500 27501 jhp0646 jhp0647     TRUE 0.791 21.000 0.031 NA   NA
 27501 27502 jhp0647 jhp0648     FALSE 0.019 473.000 0.010 NA   NA
 27502 27503 jhp0648 jhp0649     FALSE 0.018 234.000 0.000 NA   NA
 27503 27504 jhp0649 jhp0650     FALSE 0.085 190.000 0.015 NA   NA
 27504 27505 jhp0650 jhp0651     TRUE 0.880 0.000 0.020 NA   NA
 27506 27507 jhp0652 jhp0653 rpoN   TRUE 0.931 3.000 0.044 1.000   NA
 27507 27508 jhp0653 jhp0654     TRUE 0.849 13.000 0.006 1.000   NA
 27508 27509 jhp0654 jhp0655   dnaX TRUE 0.955 -3.000 0.006 0.022   NA
 27509 27510 jhp0655 jhp0656 dnaX   FALSE 0.427 67.000 0.011 1.000   NA
 27511 27512 jhp0657 jhp0658     TRUE 0.872 28.000 0.462 NA   NA
 27512 27513 jhp0658 jhp0659     FALSE 0.012 316.000 0.000 NA   NA
 27516 27517 jhp0662 jhp0663     FALSE 0.020 221.000 0.000 NA   NA
 27517 27518 jhp0663 jhp0664     TRUE 0.811 -30.000 0.009 NA   NA
 27518 27519 jhp0664 jhp0665     TRUE 0.597 94.000 0.005 0.008 N NA
 27519 27520 jhp0665 jhp0666     FALSE 0.431 36.000 0.004 NA   NA
 27520 27521 jhp0666 jhp0667     TRUE 0.975 9.000 0.455 NA   NA
 27521 27522 jhp0667 jhp0668     TRUE 0.557 116.000 0.545 NA   NA
 27522 27523 jhp0668 jhp0669     TRUE 0.953 -10.000 0.250 NA   NA
 27523 27524 jhp0669 jhp0670     FALSE 0.311 57.000 0.006 NA   NA
 27524 27525 jhp0670 jhp0671     FALSE 0.216 103.000 0.004 1.000   NA
 27525 27526 jhp0671 jhp0672   gpt TRUE 0.889 2.000 0.017 1.000   NA
 27526 27527 jhp0672 jhp0673 gpt   TRUE 0.945 9.000 0.032 1.000   NA
 27528 27529 jhp0674 jhp0675 pgpA ddl FALSE 0.479 77.000 0.018 1.000 N NA
 27529 27530 jhp0675 jhp0676 ddl   TRUE 0.907 1.000 0.046 NA   NA
 27530 27531 jhp0676 jhp0677   murF TRUE 0.939 -13.000 0.129 NA   NA
 27531 27532 jhp0677 jhp0678 murF   TRUE 0.962 10.000 0.061 1.000 N NA
 27532 27533 jhp0678 jhp0679   prsA TRUE 0.655 65.000 0.030 1.000 Y NA
 3446262 27534 jhp_t13 jhp0680   rodA_1 TRUE 0.607 -38.000 0.000 NA   NA
 27534 27535 jhp0680 jhp0681 rodA_1   TRUE 0.522 23.000 0.000 1.000   NA
 27536 27537 jhp0682 jhp0683     TRUE 0.878 -49.000 0.031 NA   NA
 27537 27538 jhp0683 jhp0684     TRUE 0.937 11.000 0.060 NA   NA
 27538 27539 jhp0684 jhp0685     TRUE 0.921 -25.000 0.044 1.000   NA
 27539 27540 jhp0685 jhp0686     TRUE 0.973 -13.000 0.431 1.000 N NA
 27540 27541 jhp0686 jhp0687     TRUE 0.944 -7.000 0.045 NA Y NA
 27541 27542 jhp0687 jhp0688     FALSE 0.408 97.000 0.043 NA N NA
 27542 27543 jhp0688 jhp0689   fliD TRUE 0.922 17.000 0.092 NA Y NA
 27543 27544 jhp0689 jhp0690 fliD fliS TRUE 0.971 42.000 0.608 0.003 Y NA
 27544 27545 jhp0690 jhp0691 fliS   TRUE 0.933 -13.000 0.101 NA   NA
 27545 27546 jhp0691 jhp0692     FALSE 0.486 53.000 0.018 NA   NA
 27546 27547 jhp0692 jhp0693     TRUE 0.610 -34.000 0.000 NA   NA
 27547 27548 jhp0693 jhp0694     TRUE 0.689 4.000 0.000 NA   NA
 27548 27549 jhp0694 jhp0695     FALSE 0.331 127.000 0.048 1.000   NA
 27549 27550 jhp0695 jhp0696     TRUE 0.666 63.000 0.098 1.000   NA
 27551 27552 jhp0697 jhp0698     TRUE 0.931 -100.000 0.059 1.000 N NA
 27553 27554 jhp0699 jhp0700   ftsY TRUE 0.881 6.000 0.011 NA   NA
 27555 27556 jhp0701 jhp0702     FALSE 0.320 28.000 0.000 NA   NA
 27556 27557 jhp0702 jhp0703     TRUE 0.917 -49.000 0.087 NA   NA
 27557 27558 jhp0703 jhp0704     TRUE 0.682 12.000 0.000 NA   NA
 27558 27559 jhp0704 jhp0705   moaA FALSE 0.009 365.000 0.000 NA   NA
 27560 27561 jhp0706 jhp0707 mobA flhB_1 TRUE 0.914 -31.000 0.026 1.000 N NA
 27562 27563 jhp0708 jhp0709   amiA TRUE 0.867 19.000 0.084 NA   NA
 27563 27564 jhp0709 jhp0710 amiA   TRUE 0.957 7.000 0.068 1.000   NA
 27564 27565 jhp0710 jhp0711   tyrS TRUE 0.864 17.000 0.029 1.000   NA
 27565 27566 jhp0711 jhp0712 tyrS spoT TRUE 0.927 20.000 0.222 1.000 N NA
 27566 27567 jhp0712 jhp0713 spoT   TRUE 0.950 -13.000 0.039 1.000 Y NA
 27567 27568 jhp0713 jhp0714   pyrH TRUE 0.713 42.000 0.033 1.000 N NA
 27568 27569 jhp0714 jhp0715 pyrH   FALSE 0.222 91.000 0.008 NA   NA
 27570 27571 jhp0716 jhp0717 acnB   FALSE 0.374 81.000 0.023 NA   NA
 27571 27572 jhp0717 jhp0718     FALSE 0.013 295.000 0.000 NA   NA
 27572 27573 jhp0718 jhp0719     FALSE 0.103 94.000 0.000 NA   NA
 27577 27578 jhp0723 jhp0724 secA   TRUE 0.983 -10.000 0.201 0.081 N NA
 27578 27579 jhp0724 jhp0725     FALSE 0.023 279.000 0.000 1.000   NA
 27580 27581 jhp0726 jhp0727 hsdS_4 hmcT TRUE 0.817 44.000 0.182 1.000 N NA
 27581 27582 jhp0727 jhp0728 hmcT   TRUE 0.742 25.000 0.014 1.000 N NA
 27582 27583 jhp0728 jhp0729   def TRUE 0.958 6.000 0.054 1.000 N NA
 27583 27584 jhp0729 jhp0730 def clpP TRUE 0.946 5.000 0.030 1.000 N NA
 27584 27585 jhp0730 jhp0731 clpP tig TRUE 0.950 21.000 0.351 1.000 Y NA
 27585 27586 jhp0731 jhp0732 tig   FALSE 0.168 113.000 0.008 NA   NA
 27586 27587 jhp0732 jhp0733   hpaA TRUE 0.901 22.000 0.333 NA   NA
 27587 27588 jhp0733 jhp0734 hpaA moaC FALSE 0.444 119.000 0.118 1.000   NA
 27588 27589 jhp0734 jhp0735 moaC mog TRUE 0.988 9.000 0.028 0.005 Y NA
 27589 27590 jhp0735 jhp0736 mog moaE TRUE 0.983 13.000 0.026 0.005 Y NA
 27590 27591 jhp0736 jhp0737 moaE moaD TRUE 0.980 1.000 0.501 1.000 Y NA
 27591 27592 jhp0737 jhp0738 moaD ribA TRUE 0.658 49.000 0.012 1.000 Y NA
 27592 27593 jhp0738 jhp0739 ribA   FALSE 0.392 90.000 0.035 NA   NA
 27593 27594 jhp0739 jhp0740   ribBA TRUE 0.510 87.000 0.103 NA   NA
 27594 27595 jhp0740 jhp0741 ribBA   TRUE 0.561 98.000 0.118 1.000 N NA
 27597 27598 jhp0743 jhp0744 fecA_2 acpS FALSE 0.081 198.000 0.005 1.000 N NA
 27598 27599 jhp0744 jhp0745 acpS fliL TRUE 0.956 7.000 0.047 1.000 N NA
 27599 27600 jhp0745 jhp0746 fliL   TRUE 0.935 9.000 0.014 1.000 N NA
 27600 27601 jhp0746 jhp0747     TRUE 0.889 -21.000 0.032 NA   NA
 27601 27602 jhp0747 jhp0748     FALSE 0.007 454.000 0.000 NA   NA
 27603 27604 jhp0749 jhp0750   moeB TRUE 0.912 1.000 0.028 1.000   NA
 27604 27605 jhp0750 jhp0751 moeB motA TRUE 0.880 16.000 0.020 1.000 N NA
 27605 27606 jhp0751 jhp0752 motA motB TRUE 0.967 3.000 0.119 1.000 Y NA
 27606 27607 jhp0752 jhp0753 motB   TRUE 0.962 -3.000 0.320 NA   NA
 27607 27608 jhp0753 jhp0754     FALSE 0.075 114.000 0.000 NA   NA
 27609 27610 jhp0755 jhp0756     TRUE 0.972 -6.000 0.429 1.000   NA
 27611 27612 jhp0757 jhp0758     TRUE 0.970 3.000 0.292 1.000 N NA
 27612 27613 jhp0758 jhp0759     FALSE 0.226 175.000 0.123 NA   NA
 27613 27614 jhp0759 jhp0760   uvrC TRUE 0.817 1.000 0.009 NA   NA
 27614 27615 jhp0760 jhp0761 uvrC hom TRUE 0.916 10.000 0.008 1.000 N NA
 27615 27616 jhp0761 jhp0762 hom   TRUE 0.788 1.000 0.000 1.000 N NA
 27616 27617 jhp0762 jhp0763   trxA FALSE 0.172 92.000 0.000 1.000   NA
 27617 27618 jhp0763 jhp0764 trxA trxB_1 TRUE 0.944 6.000 0.035 1.000   NA
 27618 27619 jhp0764 jhp0765 trxB_1   FALSE 0.020 367.000 0.000 1.000 N NA
 27620 27621 jhp0766 jhp0767   atpB FALSE 0.019 328.000 0.000 1.000   NA
 27621 27622 jhp0767 jhp0768 atpB guaB FALSE 0.296 122.000 0.018 1.000 N NA
 27622 27623 jhp0768 jhp0769 guaB gatA TRUE 0.952 10.000 0.032 1.000 N NA
 27623 27624 jhp0769 jhp0770 gatA   FALSE 0.432 59.000 0.006 1.000 N NA
 27624 27625 jhp0770 jhp0771   speE TRUE 0.902 2.000 0.016 1.000 N NA
 27625 27626 jhp0771 jhp0772 speE   FALSE 0.440 93.000 0.068 NA   NA
 27627 27628 jhp0773 jhp0774     FALSE 0.147 141.000 0.008 1.000   NA
 27628 3446263 jhp0774 jhp_t14     FALSE 0.182 57.000 0.000 NA   NA
 3446263 27629 jhp_t14 jhp0775     FALSE 0.006 547.000 0.000 NA   NA
 27629 27630 jhp0775 jhp0776     TRUE 0.885 20.000 0.156 NA   NA
 27630 27631 jhp0776 jhp0777     TRUE 0.966 -3.000 0.421 NA   NA
 27631 27632 jhp0777 jhp0778     TRUE 0.933 4.000 0.061 NA   NA
 27632 27633 jhp0778 jhp0779   dfp TRUE 0.880 -3.000 0.009 1.000   NA
 27633 27634 jhp0779 jhp0780 dfp   TRUE 0.889 0.000 0.024 NA   NA
 27635 27636 jhp0781 jhp0782 thiE thiD TRUE 0.989 -7.000 0.063 0.002 Y NA
 27636 27637 jhp0782 jhp0783 thiD thiM TRUE 0.984 -3.000 0.017 0.002 Y NA
 27637 27638 jhp0783 jhp0784 thiM hsdR_2 FALSE 0.389 93.000 0.015 1.000 N NA
 27638 27639 jhp0784 jhp0785 hsdR_2 hsdS_2 FALSE 0.120 556.000 0.034 0.005   NA
 27639 27640 jhp0785 jhp0786 hsdS_2 hsdM_2 TRUE 0.975 11.000 0.039 0.064   NA
 27642 27643 jhp0788 jhp0789     TRUE 0.889 -3.000 0.020 NA   NA
 27645 27646 jhp0791 jhp0792 gmhA waaE TRUE 0.962 -7.000 0.142 1.000 N NA
 27646 27647 jhp0792 jhp0793 waaE gmhD TRUE 0.989 -3.000 0.096 0.009 Y NA
 27647 27648 jhp0793 jhp0794 gmhD   TRUE 0.968 10.000 0.093 1.000 N NA
 27648 27649 jhp0794 jhp0795     TRUE 0.902 -13.000 0.036 NA   NA
 27649 27650 jhp0795 jhp0796     TRUE 0.847 -9.000 0.011 NA   NA
 27650 27651 jhp0796 jhp0797     TRUE 0.854 5.000 0.008 NA   NA
 27651 27652 jhp0797 jhp0798     TRUE 0.960 5.000 0.200 NA   NA
 27652 27653 jhp0798 jhp0799   dut TRUE 0.880 -3.000 0.017 NA   NA
 27653 27654 jhp0799 jhp0800 dut greA TRUE 0.918 -10.000 0.019 1.000 N NA
 27654 27655 jhp0800 jhp0801 greA lpxB TRUE 0.736 41.000 0.042 1.000 N NA
 27655 27656 jhp0801 jhp0802 lpxB   TRUE 0.862 0.000 0.013 NA   NA
 27656 27657 jhp0802 jhp0803   hypA TRUE 0.943 7.000 0.062 NA   NA
 27657 27658 jhp0803 jhp0804 hypA flgE TRUE 0.651 59.000 0.071 1.000   NA
 27658 27659 jhp0804 jhp0805 flgE cdh FALSE 0.047 209.000 0.000 1.000 N NA
 27661 27662 jhp0807 jhp0808     TRUE 0.752 85.000 0.889 NA   NA
 27662 27663 jhp0808 jhp0809   katA FALSE 0.368 148.000 0.333 NA   NA
 27667 27668 jhp0813 jhp0814     TRUE 0.596 -91.000 0.000 NA   NA
 27668 27669 jhp0814 jhp0815   ruvA FALSE 0.066 123.000 0.000 NA   NA
 27669 27670 jhp0815 jhp0816 ruvA   TRUE 0.525 27.000 0.008 NA   NA
 27671 27672 jhp0817 jhp0818   cysS TRUE 0.910 1.000 0.027 1.000   NA
 27672 27673 jhp0818 jhp0819 cysS vacA FALSE 0.022 287.000 0.000 1.000   NA
 27674 27675 jhp0820 jhp0821   fecE TRUE 0.750 64.000 0.222 1.000 N NA
 27675 27676 jhp0821 jhp0822 fecE fecD TRUE 0.988 0.000 1.000 1.000 Y NA
 27676 27677 jhp0822 jhp0823 fecD   TRUE 0.963 -7.000 0.222 1.000   NA
 27679 27680 jhp0825 jhp0826   tnpB FALSE 0.044 149.000 0.000 NA   NA
 27682 27683 jhp0828 jhp0829     FALSE 0.155 68.000 0.000 NA   NA
 27683 27684 jhp0829 jhp0830     FALSE 0.010 364.000 0.000 NA   NA
 27684 27685 jhp0830 jhp0831     FALSE 0.227 48.000 0.000 NA   NA
 27685 27686 jhp0831 jhp0832     TRUE 0.957 14.000 0.400 NA   NA
 27686 27687 jhp0832 jhp0833   babA FALSE 0.006 496.000 0.000 NA   NA
 27687 3446264 jhp0833 jhp_t15 babA   FALSE 0.009 375.000 0.000 NA   NA
 3446264 3446265 jhp_t15 jhp_t16     FALSE 0.298 33.000 0.000 NA   NA
 3446265 27688 jhp_t16 jhp0834     FALSE 0.008 439.000 0.000 NA   NA
 27688 27689 jhp0834 jhp0835   hypD TRUE 0.924 -33.000 0.000 0.011   NA
 27689 27690 jhp0835 jhp0836 hypD hypC TRUE 0.941 15.000 0.084 NA Y NA
 27690 27691 jhp0836 jhp0837 hypC hypB TRUE 0.976 0.000 0.463 NA Y NA
 27691 27692 jhp0837 jhp0838 hypB   FALSE 0.252 113.000 0.021 NA   NA
 27692 27693 jhp0838 jhp0839     TRUE 0.930 11.000 0.045 NA   NA
 27693 27694 jhp0839 jhp0840   ackA TRUE 0.914 0.000 0.045 NA   NA
 27694 27695 jhp0840 jhp0841 ackA pta TRUE 0.970 12.000 0.103 1.000 Y NA
 27696 27697 jhp0842 jhp0843     TRUE 0.655 51.000 0.079 NA   NA
 27697 27698 jhp0843 jhp0844     TRUE 0.975 -3.000 0.368 NA Y NA
 27698 27699 jhp0844 jhp0845     TRUE 0.810 52.000 0.571 NA   NA
 27699 27700 jhp0845 jhp0846     TRUE 0.959 10.000 0.127 NA   NA
 27700 27701 jhp0846 jhp0847     TRUE 0.985 9.000 0.048 0.062 Y NA
 27701 27702 jhp0847 jhp0848   hopC FALSE 0.005 1164.000 0.000 NA   NA
 27702 27703 jhp0848 jhp0849 hopC hopB TRUE 0.905 22.000 0.375 NA   NA
 27704 27705 jhp0850 jhp0851   frpB_2 FALSE 0.018 338.000 0.000 1.000   NA
 27705 27706 jhp0851 jhp0852 frpB_2   FALSE 0.121 176.000 0.022 NA   NA
 27706 27707 jhp0852 jhp0853   carB TRUE 0.905 5.000 0.020 NA   NA
 27707 27708 jhp0853 jhp0854 carB   FALSE 0.232 100.000 0.011 NA   NA
 27709 27710 jhp0855 jhp0856 gap_1   TRUE 0.705 81.000 0.368 1.000   NA
 27710 27711 jhp0856 jhp0857     TRUE 0.792 53.000 0.500 NA   NA
 27713 27714 jhp0859 jhp0860 recR   TRUE 0.876 -3.000 0.008 1.000   NA
 27714 27715 jhp0860 jhp0861   htpX TRUE 0.921 -13.000 0.034 1.000   NA
 27715 27716 jhp0861 jhp0862 htpX folE_1 TRUE 0.945 1.000 0.102 1.000   NA
 27716 27717 jhp0862 jhp0863 folE_1 folE_2 FALSE 0.143 255.000 0.000 0.002   NA
 27717 27718 jhp0863 jhp0864 folE_2 ispA TRUE 0.955 16.000 0.167 1.000 Y NA
 27718 27719 jhp0864 jhp0865 ispA surE TRUE 0.936 -3.000 0.041 1.000   NA
 27719 27720 jhp0865 jhp0866 surE   TRUE 0.806 -3.000 0.006 NA   NA
 27720 27721 jhp0866 jhp0867     TRUE 0.791 2.000 0.008 NA   NA
 27721 27722 jhp0867 jhp0868     TRUE 0.964 -3.000 0.139 1.000 N NA
 27722 27723 jhp0868 jhp0869     FALSE 0.361 92.000 0.015 1.000   NA
 27723 27724 jhp0869 jhp0870     FALSE 0.019 226.000 0.000 NA   NA
 27725 27726 jhp0871 jhp0872 proP   FALSE 0.014 283.000 0.000 NA   NA
 27726 27727 jhp0872 jhp0873     TRUE 0.722 7.000 0.000 NA   NA
 27727 27728 jhp0873 jhp0874     FALSE 0.342 72.000 0.013 NA   NA
 27728 27729 jhp0874 jhp0875     TRUE 0.992 -16.000 0.594 0.039 Y NA
 27729 27730 jhp0875 jhp0876   alr TRUE 0.636 66.000 0.056 1.000 N NA
 27730 27731 jhp0876 jhp0877 alr   TRUE 0.977 7.000 0.267 1.000 N NA
 27731 27732 jhp0877 jhp0878   dadA TRUE 0.876 41.000 0.267 1.000 Y NA
 27732 27733 jhp0878 jhp0879 dadA   TRUE 0.928 23.000 0.667 NA N NA
 3446266 3446267 jhp_t17 jhp_t18     FALSE 0.260 40.000 0.000 NA   NA
 3446267 3446268 jhp_t18 jhp_t19     FALSE 0.195 54.000 0.000 NA   NA
 3446268 3446269 jhp_t19 jhp_t20     FALSE 0.217 50.000 0.000 NA   NA
 3446269 27734 jhp_t20 jhp0880     FALSE 0.062 127.000 0.000 NA   NA
 27734 27735 jhp0880 jhp0881     FALSE 0.011 325.000 0.000 NA   NA
 27736 27737 jhp0882 jhp0883     TRUE 0.898 10.000 0.013 NA   NA
 27737 27738 jhp0883 jhp0884   accD TRUE 0.893 14.000 0.035 NA   NA
 27739 27740 jhp0885 jhp0886     TRUE 0.931 11.000 0.047 NA   NA
 27741 27742 jhp0887 jhp0888     TRUE 0.821 65.000 1.000 NA   NA
 27742 27743 jhp0888 jhp0889   lgt TRUE 0.907 0.000 0.013 1.000 N NA
 27743 27744 jhp0889 jhp0890 lgt   TRUE 0.931 9.000 0.013 1.000 N NA
 27744 27745 jhp0890 jhp0891   waaA TRUE 0.924 18.000 0.133 1.000 N NA
 27745 27746 jhp0891 jhp0892 waaA   TRUE 0.936 1.000 0.122 NA   NA
 27746 27747 jhp0892 jhp0893     TRUE 0.972 10.000 0.342 NA   NA
 27747 27748 jhp0893 jhp0894   glyQ TRUE 0.899 2.000 0.041 NA   NA
 27748 27749 jhp0894 jhp0895 glyQ gpsA TRUE 0.894 14.000 0.013 1.000 N NA
 27749 27750 jhp0895 jhp0896 gpsA   FALSE 0.014 277.000 0.000 NA   NA
 27750 27751 jhp0896 jhp0897     FALSE 0.089 356.000 0.200 NA   NA
 27751 27752 jhp0897 jhp0898     TRUE 0.962 -3.000 0.300 NA   NA
 27752 27753 jhp0898 jhp0899     TRUE 0.650 66.000 0.182 NA   NA
 27753 27754 jhp0899 jhp0900     TRUE 0.965 0.000 0.455 NA   NA
 27754 27755 jhp0900 jhp0901     TRUE 0.732 60.000 0.375 NA   NA
 27755 27756 jhp0901 jhp0902     FALSE 0.009 374.000 0.000 NA   NA
 27756 27757 jhp0902 jhp0903   czcA_1 TRUE 0.949 16.000 0.514 NA   NA
 27757 27758 jhp0903 jhp0904 czcA_1 czcB_1 TRUE 0.970 0.000 0.464 NA N NA
 27758 27759 jhp0904 jhp0905 czcB_1   TRUE 0.985 -3.000 0.857 NA Y NA
 27759 27760 jhp0905 jhp0906   glyS TRUE 0.904 -10.000 0.013 1.000 N NA
 27761 27762 jhp0907 jhp0908   pgm TRUE 0.861 13.000 0.013 NA   NA
 27762 27763 jhp0908 jhp0909 pgm gatC TRUE 0.863 15.000 0.009 1.000 N NA
 27765 27766 jhp0911 jhp0912   ftsA TRUE 0.937 16.000 0.184 1.000   NA
 27766 27767 jhp0912 jhp0913 ftsA ftsZ FALSE 0.495 128.000 0.114 1.000 Y NA
 27768 27769 jhp0914 jhp0915     FALSE 0.010 347.000 0.000 NA   NA
 27769 27770 jhp0915 jhp0916     FALSE 0.333 140.000 0.182 NA   NA
 27771 27772 jhp0917 jhp0918 virB4_2 virB4_3 TRUE 0.647 -12.000 0.000 NA   NA
 27772 27773 jhp0918 jhp0919 virB4_3 topA_2 FALSE 0.279 37.000 0.000 NA   NA
 27773 27774 jhp0919 jhp0920 topA_2   FALSE 0.009 375.000 0.000 NA   NA
 27774 27775 jhp0920 jhp0921     FALSE 0.056 130.000 0.000 NA   NA
 27775 27776 jhp0921     jhp0922m TRUE 0.981 0.000 0.750 NA Y NA
 27776 27777   jhp0924 jhp0922m   TRUE 0.971 -3.000 0.571 NA   NA
 27778 27779 jhp0925 jhp0926     TRUE 0.975 7.000 0.500 NA   NA
 27780 27781 jhp0927 jhp0928     FALSE 0.043 150.000 0.000 NA   NA
 27781 27782 jhp0928 jhp0929     TRUE 0.718 6.000 0.000 NA   NA
 27782 27783 jhp0929 jhp0930     FALSE 0.075 114.000 0.000 NA   NA
 27783 27784 jhp0930 jhp0931   topA_3 TRUE 0.657 13.000 0.000 NA   NA
 27784 27785 jhp0931 jhp0932 topA_3   TRUE 0.691 55.000 0.182 NA   NA
 27785 27786 jhp0932 jhp0933     TRUE 0.960 -30.000 0.500 NA   NA
 27787 27788 jhp0934 jhp0935     TRUE 0.875 47.000 1.000 NA   NA
 27789 27790 jhp0936 jhp0937     TRUE 0.973 -3.000 0.667 NA   NA
 27790 27791 jhp0937 jhp0938     TRUE 0.962 12.000 0.286 NA   NA
 27797 27798 jhp0944 jhp0945     TRUE 0.963 0.000 0.400 NA   NA
 27798 27799 jhp0945 jhp0946     TRUE 0.593 -207.000 0.000 NA   NA
 27799 27800 jhp0946 jhp0947     TRUE 0.911 27.000 0.833 NA   NA
 27800 27801 jhp0947 jhp0948     TRUE 0.803 51.000 0.500 NA   NA
 27801 27802 jhp0948 jhp0949     TRUE 0.625 2.000 0.000 NA   NA
 27802 27803 jhp0949 jhp0950     FALSE 0.144 72.000 0.000 NA   NA
 27804 1937534 jhp0951 jhpr1     FALSE 0.042 156.000 0.000 NA   NA
 1937534 1937535 jhpr1 jhpr2     FALSE 0.018 231.000 0.000 NA   NA
 27807 27808 jhp0954 jhp0955     FALSE 0.195 54.000 0.000 NA   NA
 27808 27809 jhp0955 jhp0956     TRUE 0.600 109.000 0.600 NA   NA
 27809 27810 jhp0956 jhp0957     TRUE 0.970 -12.000 0.667 NA   NA
 27810 27811 jhp0957 jhp0958     FALSE 0.044 148.000 0.000 NA   NA
 27811 27812 jhp0958 jhp0959     FALSE 0.119 86.000 0.000 NA   NA
 27812 27813 jhp0959 jhp0960     FALSE 0.046 145.000 0.000 NA   NA
 27813 27814 jhp0960 jhp0961     TRUE 0.957 2.000 0.400 NA   NA
 27815 27816 jhp0962 jhp0963 speA   TRUE 0.915 14.000 0.024 1.000 N NA
 27816 27817 jhp0963 jhp0964     TRUE 0.955 5.000 0.093 NA N NA
 27817 27818 jhp0964 jhp0965     TRUE 0.860 17.000 0.053 NA   NA
 27818 27819 jhp0965 jhp0966     TRUE 0.915 4.000 0.033 NA   NA
 27819 27820 jhp0966 jhp0967   metG TRUE 0.863 1.000 0.009 1.000   NA
 27822 27823 jhp0969 jhp0970     FALSE 0.006 565.000 0.000 NA   NA
 27823 3446270 jhp0970 jhp_t21     FALSE 0.329 27.000 0.000 NA   NA
 3446270 3446271 jhp_t21 jhp_t22     FALSE 0.421 22.000 0.000 NA   NA
 3446271 3446272 jhp_t22 jhp_t23     FALSE 0.173 60.000 0.000 NA   NA
 3446272 3446273 jhp_t23 jhp_t24     FALSE 0.159 67.000 0.000 NA   NA
 3446273 27824 jhp_t24 jhp0971     FALSE 0.030 184.000 0.000 NA   NA
 27824 27825 jhp0971 jhp0972   guaA FALSE 0.304 84.000 0.007 1.000   NA
 27825 27826 jhp0972 jhp0973 guaA   TRUE 0.818 -3.000 0.007 NA   NA
 27826 27827 jhp0973 jhp0974     FALSE 0.421 180.000 0.875 NA   NA
 27827 27828 jhp0974 jhp0975     TRUE 0.509 104.000 0.241 NA   NA
 27828 27829 jhp0975 jhp0976     TRUE 0.801 26.000 0.105 NA   NA
 27829 27830 jhp0976 jhp0977     TRUE 0.828 19.000 0.014 1.000 N NA
 27831 27832 jhp0978 jhp0979 pheS pheT TRUE 0.995 0.000 0.574 0.001 Y NA
 27832 27833 jhp0979 jhp0980 pheT aroA TRUE 0.853 20.000 0.028 1.000 N NA
 27833 27834 jhp0980 jhp0981 aroA lytB TRUE 0.932 -10.000 0.032 1.000 N NA
 27834 27835 jhp0981 jhp0982 lytB rpsA FALSE 0.397 122.000 0.058 1.000 N NA
 27835 27836 jhp0982 jhp0983 rpsA   FALSE 0.475 29.000 0.005 NA   NA
 27836 27837 jhp0983 jhp0984   serA TRUE 0.711 16.000 0.006 NA   NA
 27837 27838 jhp0984 jhp0985 serA   TRUE 0.941 10.000 0.016 NA Y NA
 27838 27839 jhp0985 jhp0986     TRUE 0.698 23.000 0.017 NA   NA
 27839 27840 jhp0986 jhp0987     TRUE 0.850 2.000 0.015 NA   NA
 27840 27841 jhp0987 jhp0988   cheV_3 TRUE 0.933 2.000 0.065 1.000   NA
 27841 27842 jhp0988 jhp0989 cheV_3 cheA TRUE 0.917 57.000 0.147 0.008 Y NA
 27842 27843 jhp0989 jhp0990 cheA cheW TRUE 0.990 -3.000 0.137 0.011 Y NA
 27845 27846 jhp0992 jhp0993 sodF   TRUE 0.583 54.000 0.018 1.000 N NA
 27847 27848 jhp0994 jhp0995 priA   TRUE 0.765 -15.000 0.003 NA   NA
 27848 27849 jhp0995 jhp0996     TRUE 0.962 13.000 0.400 NA   NA
 27852 27853 jhp0999 jhp1000   hemG TRUE 0.953 -3.000 0.068 1.000 N NA
 27853 27854 jhp1000 jhp1001 hemG gdhA TRUE 0.534 67.000 0.020 1.000 N NA
 27855 27856 jhp1002 jhp1003 fucU   TRUE 0.984 10.000 0.118 0.074   NA
 27856 27857 jhp1003 jhp1004     TRUE 0.989 10.000 0.750 1.000 Y NA
 27857 27858 jhp1004 jhp1005   hemH TRUE 0.507 74.000 0.024 1.000 N NA
 27859 27860 jhp1006 jhp1007     TRUE 0.930 1.000 0.098 NA   NA
 27861 27862 jhp1008 jhp1009   dcd FALSE 0.074 169.000 0.007 NA   NA
 27863 27864 jhp1010 jhp1011 accB accC TRUE 0.991 6.000 0.071 0.003 Y NA
 27864 27865 jhp1011 jhp1012 accC   FALSE 0.167 93.000 0.000 1.000   NA
 27865 27866 jhp1012 jhp1013     TRUE 0.952 0.000 0.222 NA   NA
 27866 27867 jhp1013 jhp1014     TRUE 0.691 94.000 0.778 NA   NA
 27867 27868 jhp1014 jhp1015     TRUE 0.924 -3.000 0.053 NA   NA
 27869 27870 jhp1016 jhp1017 nrdB pcm TRUE 0.976 10.000 0.227 1.000 N NA
 27870 27871 jhp1017 jhp1018 pcm   TRUE 0.755 22.000 0.012 1.000   NA
 27871 27872 jhp1018 jhp1019   truA TRUE 0.930 2.000 0.059 1.000   NA
 3446275 3446276 jhp_t26 jhp_t27     FALSE 0.490 18.000 0.000 NA   NA
 3446276 27875 jhp_t27 jhp1022     FALSE 0.005 631.000 0.000 NA   NA
 27875 27876 jhp1022 jhp1023     TRUE 0.830 18.000 0.035 NA   NA
 27877 27878 jhp1024 jhp1025   eda TRUE 0.537 70.000 0.034 1.000   NA
 27878 27879 jhp1025 jhp1026 eda edd TRUE 0.962 19.000 0.523 1.000 Y NA
 27880 27881 jhp1027 jhp1028 zwf   TRUE 0.957 11.000 0.028 1.000 Y NA
 27881 27882 jhp1028 jhp1029   glk TRUE 0.965 -13.000 0.117 1.000 Y NA
 27882 27883 jhp1029 jhp1030 glk   FALSE 0.228 170.000 0.061 1.000   NA
 27884 27885 jhp1031 jhp1032     TRUE 0.807 140.000 0.429 0.004 Y NA
 27888 27889 jhp1035 jhp1036 porG porD TRUE 0.987 16.000 0.205 0.003 Y NA
 27889 27890 jhp1036 jhp1037 porD porA TRUE 0.996 10.000 0.625 0.003 Y NA
 27890 27891 jhp1037 jhp1038 porA porB TRUE 0.992 13.000 0.268 0.003 Y NA
 27891 27892 jhp1038 jhp1039 porB purB FALSE 0.258 108.000 0.007 1.000 N NA
 27892 27893 jhp1039 jhp1040 purB   FALSE 0.028 299.000 0.007 NA   NA
 27894 27895 jhp1041 jhp1042 uvrB   FALSE 0.221 49.000 0.000 NA   NA
 27895 27896 jhp1042 jhp1043     TRUE 0.675 -3.000 0.000 NA   NA
 27896 27897 jhp1043 jhp1044     FALSE 0.463 144.000 0.667 NA   NA
 27897 27898 jhp1044 jhp1045     FALSE 0.008 419.000 0.000 NA   NA
 27898 27899 jhp1045 jhp1046   ggt FALSE 0.029 244.000 0.000 1.000   NA
 27899 27900 jhp1046 jhp1047 ggt flgK FALSE 0.184 188.000 0.041 1.000 N NA
 27900 27901 jhp1047 jhp1048 flgK   TRUE 0.964 2.000 0.558 NA   NA
 27901 27902 jhp1048 jhp1049     FALSE 0.504 79.000 0.069 NA   NA
 27902 27903 jhp1049 jhp1050     TRUE 0.963 -7.000 0.389 NA   NA
 27903 27904 jhp1050 jhp1051     FALSE 0.413 143.000 0.258 1.000   NA
 27904 27905 jhp1051 jhp1052   slyD FALSE 0.020 310.000 0.000 1.000   NA
 27905 27906 jhp1052 jhp1053 slyD   TRUE 0.973 -13.000 0.543 1.000   NA
 27906 27907 jhp1053 jhp1054     TRUE 0.985 8.000 0.794 1.000   NA
 27907 27908 jhp1054 jhp1055   tolB TRUE 0.829 67.000 0.702 1.000 N NA
 27908 27909 jhp1055 jhp1056 tolB   TRUE 0.930 -3.000 0.064 NA   NA
 27909 27910 jhp1056 jhp1057   exbD_1 TRUE 0.867 19.000 0.086 NA   NA
 27910 27911 jhp1057 jhp1058 exbD_1 exbB_1 TRUE 0.961 52.000 0.944 0.037 Y NA
 27911 27912 jhp1058 jhp1059 exbB_1 atpC TRUE 0.949 11.000 0.036 1.000 N NA
 27912 27913 jhp1059 jhp1060 atpC atpD TRUE 0.996 11.000 0.837 0.008 Y NA
 27913 27914 jhp1060 jhp1061 atpD atpG TRUE 0.981 25.000 0.724 0.008 Y NA
 27914 27915 jhp1061 jhp1062 atpG atpA TRUE 0.994 15.000 0.846 0.008 Y NA
 27915 27916 jhp1062 jhp1063 atpA atpH TRUE 0.986 23.000 0.864 0.008 Y NA
 27916 27917 jhp1063 jhp1064 atpH atpF TRUE 0.988 1.000 0.132 0.008 Y NA
 27917 27918 jhp1064 jhp1065 atpF atpX TRUE 0.990 4.000 0.110 0.008 Y NA
 27918 27919 jhp1065 jhp1066 atpX   FALSE 0.427 105.000 0.037 1.000 N NA
 27919 27920 jhp1066 jhp1067     TRUE 0.982 3.000 0.827 1.000 N NA
 27920 27921 jhp1067 jhp1068     TRUE 0.937 3.000 0.040 1.000 N NA
 27921 27922 jhp1068 jhp1069   fmt TRUE 0.936 -3.000 0.029 1.000 N NA
 27922 27923 jhp1069 jhp1070 fmt   TRUE 0.626 24.000 0.005 1.000   NA
 27923 27924 jhp1070 jhp1071     TRUE 0.685 35.000 0.041 NA   NA
 1937536 27926 jhpr3 jhp1073     FALSE 0.005 737.000 0.000 NA   NA
 27926 27927 jhp1073 jhp1074   rplS FALSE 0.005 853.000 0.000 NA   NA
 27927 27928 jhp1074 jhp1075 rplS trmD TRUE 0.955 22.000 0.567 1.000 Y NA
 27928 27929 jhp1075 jhp1076 trmD   TRUE 0.982 1.000 0.672 1.000 Y NA
 27929 27930 jhp1076 jhp1077     TRUE 0.977 10.000 0.324 1.000   NA
 27930 27931 jhp1077 jhp1078   rpsP TRUE 0.946 17.000 0.385 1.000   NA
 27931 27932 jhp1078 jhp1079 rpsP ffh TRUE 0.747 74.000 0.361 1.000 N NA
 27932 27933 jhp1079 jhp1080 ffh valS TRUE 0.927 15.000 0.006 0.097 N NA
 27934 27935 jhp1081 jhp1082   murG TRUE 0.897 12.000 0.022 NA   NA
 27935 27936 jhp1082 jhp1083 murG   FALSE 0.255 109.000 0.020 NA   NA
 27936 27937 jhp1083 jhp1084     TRUE 0.876 23.000 0.250 NA   NA
 27937 27938 jhp1084 jhp1085   proC TRUE 0.896 14.000 0.038 NA   NA
 27938 27939 jhp1085 jhp1086 proC fic TRUE 0.865 27.000 0.151 1.000 N NA
 27940 27941 jhp1087 jhp1088   fldA FALSE 0.335 55.000 0.007 NA   NA
 27941 27942 jhp1088 jhp1089 fldA   TRUE 0.587 92.000 0.281 NA   NA
 27943 27944 jhp1090 jhp1091 fixS trxB_2 TRUE 0.765 26.000 0.043 NA N NA
 27946 27947 jhp1093 jhp1094 pgi   FALSE 0.021 304.000 0.000 1.000   NA
 27949 27950 jhp1096 jhp1097     TRUE 0.995 2.000 0.841 0.004 Y NA
 27950 27951 jhp1097 jhp1098     TRUE 0.983 2.000 0.773 1.000 Y NA
 27951 27952 jhp1098 jhp1099     TRUE 0.901 49.000 0.671 1.000 Y NA
 27952 27953 jhp1099 jhp1100     FALSE 0.356 122.000 0.098 NA   NA
 27954 27955 jhp1101 jhp1102 gluP   FALSE 0.225 129.000 0.016 1.000   NA
 27955 27956 jhp1102 jhp1103     FALSE 0.007 442.000 0.000 NA   NA
 27956 27957 jhp1103 jhp1104   deoD FALSE 0.007 463.000 0.000 NA   NA
 27957 27958 jhp1104 jhp1105 deoD deoB TRUE 0.919 -3.000 0.016 1.000 N NA
 27958 27959 jhp1105 jhp1106 deoB   TRUE 0.953 12.000 0.062 1.000 N NA
 27959 3446277 jhp1106 jhp_t28     FALSE 0.086 106.000 0.000 NA   NA
 27960 27961 jhp1107 jhp1108     TRUE 0.868 16.000 0.029 NA N NA
 27962 27963 jhp1109 jhp1110     TRUE 0.803 26.000 0.039 1.000 N NA
 27963 27964 jhp1110 jhp1111     FALSE 0.227 170.000 0.041 1.000 N NA
 27966 27967 jhp1113 jhp1114   asd FALSE 0.008 435.000 0.000 NA   NA
 27967 27968 jhp1114 jhp1115 asd hisS TRUE 0.957 -13.000 0.011 0.044 N NA
 27970 27971 jhp1117 jhp1118   fusA FALSE 0.006 543.000 0.000 NA   NA
 27971 27972 jhp1118 jhp1119 fusA rpsG TRUE 0.985 12.000 0.579 1.000 Y NA
 27972 27973 jhp1119 jhp1120 rpsG rpsL TRUE 0.991 16.000 0.620 0.006 Y NA
 27973 27974 jhp1120 jhp1121 rpsL rpoB TRUE 0.616 88.000 0.122 1.000 N NA
 27974 27975 jhp1121 jhp1122 rpoB rplL FALSE 0.077 222.000 0.008 1.000 N NA
 27975 27976 jhp1122 jhp1123 rplL rplJ TRUE 0.969 43.000 0.884 0.030 Y NA
 27976 27977 jhp1123 jhp1124 rplJ rplA TRUE 0.821 109.000 0.302 0.039 Y NA
 27977 27978 jhp1124 jhp1125 rplA rplK TRUE 0.964 45.000 0.838 0.039 Y NA
 27978 27979 jhp1125 jhp1126 rplK nusG TRUE 0.960 18.000 0.681 1.000 N NA
 27979 27980 jhp1126 jhp1126a nusG secE TRUE 0.928 27.000 0.843 1.000   NA
 27980 3446278 jhp1126a jhp_t29 secE   FALSE 0.055 132.000 0.000 NA   NA
 3446278 27981 jhp_t29 jhp1127   rpmG FALSE 0.260 40.000 0.000 NA   NA
 27981 27982 jhp1127 jhp1128 rpmG tufA TRUE 0.817 47.000 0.099 1.000 Y NA
 27982 3446279 jhp1128 jhp_t30 tufA   FALSE 0.061 128.000 0.000 NA   NA
 3446279 3446280 jhp_t30 jhp_t31     FALSE 0.306 31.000 0.000 NA   NA
 3446280 3446281 jhp_t31 jhp_t32     TRUE 0.511 17.000 0.000 NA   NA
 3446281 3446282 jhp_t32 jhp_t33     FALSE 0.320 28.000 0.000 NA   NA
 27984 27985 jhp1130 jhp1131   M.HpyI FALSE 0.149 188.000 0.030 1.000   NA
 27985 27986 jhp1131 jhp1132 M.HpyI   FALSE 0.011 329.000 0.000 NA   NA
 27986 27987 jhp1132 jhp1133   cysE FALSE 0.019 229.000 0.000 NA   NA
 27987 3446283 jhp1133 jhp_t34 cysE   FALSE 0.012 301.000 0.000 NA   NA
 3446283 3446284 jhp_t34 jhp_t35     FALSE 0.195 54.000 0.000 NA   NA
 3446284 27989 jhp_t35 jhp1135   atpE FALSE 0.150 70.000 0.000 NA   NA
 27989 27990 jhp1135 jhp1136 atpE pnp FALSE 0.210 133.000 0.016 1.000   NA
 27990 27991 jhp1136 jhp1137 pnp   TRUE 0.895 3.000 0.028 NA   NA
 27991 27992 jhp1137 jhp1138   imp TRUE 0.938 14.000 0.165 NA   NA
 27992 27993 jhp1138 jhp1139 imp   TRUE 0.926 -37.000 0.116 NA   NA
 27993 27994 jhp1139 jhp1140   purD FALSE 0.477 49.000 0.013 NA   NA
 27994 27995 jhp1140 jhp1141 purD   FALSE 0.069 314.000 0.000 0.096 N NA
 27995 27996 jhp1141 jhp1142     TRUE 0.891 -6.000 0.008 1.000 N NA
 27996 27997 jhp1142 jhp1143   dld TRUE 0.590 40.000 0.008 1.000 N NA
 27998 27999 jhp1144 jhp1145   hemD TRUE 0.926 3.000 0.026 1.000 N NA
 27999 28000 jhp1145 jhp1146 hemD   TRUE 0.660 57.000 0.051 1.000 N NA
 28002 28003 jhp1148 jhp1149   mutT FALSE 0.196 161.000 0.019 1.000 N NA
 28003 28004 jhp1149 jhp1150 mutT lysC TRUE 0.946 -6.000 0.051 1.000 N NA
 28004 28005 jhp1150 jhp1151 lysC   TRUE 0.923 -3.000 0.050 NA   NA
 28005 28006 jhp1151 jhp1152   holB TRUE 0.924 -3.000 0.053 NA   NA
 28006 28007 jhp1152 jhp1153 holB folP TRUE 0.941 -3.000 0.054 1.000   NA
 28009 28010 jhp1155 jhp1156     TRUE 0.957 4.000 0.211 NA   NA
 28010 28011 jhp1156 jhp1157     TRUE 0.587 79.000 0.174 NA   NA
 28011 28012 jhp1157 jhp1158   carA TRUE 0.911 0.000 0.041 NA   NA
 28012 28013 jhp1158 jhp1159 carA   FALSE 0.335 169.000 0.008 0.007   NA
 28014 28015 jhp1160 jhp1161     FALSE 0.063 177.000 0.005 NA   NA
 28015 28016 jhp1161 jhp1162   alaS TRUE 0.871 2.000 0.015 NA N NA
 28018 28019 jhp1164 jhp1165 babB rpsR FALSE 0.014 277.000 0.000 NA   NA
 28019 28020 jhp1165 jhp1166 rpsR ssb TRUE 0.831 23.000 0.034 1.000 N NA
 28020 28021 jhp1166 jhp1167 ssb rpsF TRUE 0.915 15.000 0.033 1.000 N NA
 28021 28022 jhp1167 jhp1168 rpsF   FALSE 0.275 129.000 0.020 1.000 N NA
 28022 28023 jhp1168 jhp1169   vacB TRUE 0.924 -10.000 0.024 1.000 N NA
 28023 28024 jhp1169 jhp1170 vacB aroE TRUE 0.922 0.000 0.020 1.000 N NA
 28024 28025 jhp1170 jhp1171 aroE   TRUE 0.725 8.000 0.000 NA   NA
 28025 28026 jhp1171 jhp1172     TRUE 0.729 9.000 0.000 NA   NA
 28026 28027 jhp1172 jhp1173     TRUE 0.990 -3.000 0.500 0.026   NA
 28027 28028 jhp1173 jhp1174   trpS TRUE 0.867 1.000 0.007 1.000 N NA
 28028 28029 jhp1174 jhp1175 trpS   FALSE 0.443 72.000 0.016 1.000   NA
 28030 28031 jhp1176 jhp1177 secG frr TRUE 0.883 0.000 0.008 1.000 N NA
 28031 28032 jhp1177 jhp1178 frr pyrE TRUE 0.937 4.000 0.026 1.000 N NA
 28032 28033 jhp1178 jhp1179 pyrE   TRUE 0.927 -10.000 0.071 NA   NA
 28033 28034 jhp1179 jhp1180     TRUE 0.933 -3.000 0.070 NA   NA
 28034 28035 jhp1180 jhp1181   nuoA TRUE 0.527 93.000 0.061 1.000 N NA
 28035 28036 jhp1181 jhp1182 nuoA nuoB TRUE 0.994 0.000 0.571 0.004 Y NA
 28036 28037 jhp1182 jhp1183 nuoB nuoC TRUE 0.995 0.000 0.703 0.004 Y NA
 28037 28038 jhp1183 jhp1184 nuoC nuoD TRUE 0.993 2.000 0.650 0.011 Y NA
 28038 28039 jhp1184 jhp1185 nuoD nuoE TRUE 0.992 -3.000 0.650 0.011   NA
 28039 28040 jhp1185 jhp1186 nuoE nuoF TRUE 0.980 3.000 0.071 0.011   NA
 28040 28041 jhp1186 jhp1187 nuoF nuoG TRUE 0.982 -3.000 0.074 0.011   NA
 28041 28042 jhp1187 jhp1188 nuoG nuoH TRUE 0.987 -3.000 0.065 0.011 Y NA
 28042 28043 jhp1188 jhp1189 nuoH nuoI TRUE 0.995 10.000 0.500 0.011 Y NA
 28043 28044 jhp1189 jhp1190 nuoI nuoJ TRUE 0.993 -7.000 0.442 0.011 Y NA
 28044 28045 jhp1190 jhp1191 nuoJ nuoK TRUE 0.989 -3.000 0.064 0.004 Y NA
 28045 28046 jhp1191 jhp1192 nuoK nuoL TRUE 0.985 3.000 0.056 0.011 Y NA
 28046 28047 jhp1192 jhp1193 nuoL nuoM TRUE 0.990 4.000 0.056 0.002 Y NA
 28047 28048 jhp1193 jhp1194 nuoM nuoN TRUE 0.993 -13.000 0.389 0.002 Y NA
 28048 28049 jhp1194 jhp1195 nuoN pflA TRUE 0.975 -10.000 0.586 1.000   NA
 28049 28050 jhp1195 jhp1196 pflA   TRUE 0.912 2.000 0.030 1.000   NA
 28050 28051 jhp1196 jhp1197     FALSE 0.064 181.000 0.007 NA   NA
 28052 28053 jhp1198 jhp1199 trpA trpB TRUE 0.997 -3.000 0.947 0.001 Y NA
 28053 28054 jhp1199 jhp1200 trpB trpC TRUE 0.991 2.000 0.221 0.002 Y NA
 28054 28055 jhp1200 jhp1201 trpC trpD TRUE 0.977 -7.000 0.293 1.000 Y NA
 28055 28056 jhp1201 jhp1202 trpD trpG TRUE 0.966 -3.000 0.083 1.000 Y NA
 28056 28057 jhp1202 jhp1203 trpG trpE TRUE 0.996 -3.000 0.703 0.001 Y NA
 28057 28058 jhp1203 jhp1204 trpE   FALSE 0.093 229.000 0.016 1.000 N NA
 28058 28059 jhp1204 jhp1205     TRUE 0.610 68.000 0.068 1.000   NA
 28062 28063 jhp1208 jhp1209     TRUE 0.922 24.000 0.800 NA   NA
 28063 28064 jhp1209 jhp1210   pnuC FALSE 0.219 186.000 0.182 NA   NA
 28064 28065 jhp1210 jhp1211 pnuC   TRUE 0.939 -12.000 0.021 1.000 Y NA
 28066 28067 jhp1212 jhp1213 rplQ rpoA TRUE 0.983 0.000 0.873 1.000 N NA
 28067 28068 jhp1213 jhp1214 rpoA rpsD TRUE 0.980 12.000 0.549 1.000 N NA
 28068 28069 jhp1214 jhp1215 rpsD rpsK TRUE 0.994 10.000 0.509 0.038 Y NA
 28069 28070 jhp1215 jhp1216 rpsK rpsM TRUE 0.983 23.000 0.810 0.030 Y NA
 28070 28071 jhp1216 jhp1217 rpsM rpmJ TRUE 0.986 4.000 0.194 0.030   NA
 28071 28072 jhp1217 jhp1218 rpmJ infA TRUE 0.604 79.000 0.104 1.000   NA
 28072 28073 jhp1218 jhp1219 infA map TRUE 0.957 0.000 0.051 1.000 Y NA
 28073 28074 jhp1219 jhp1220 map secY TRUE 0.928 0.000 0.026 1.000 N NA
 28074 28075 jhp1220 jhp1221 secY rplO TRUE 0.914 35.000 0.730 1.000 N NA
 28075 28076 jhp1221 jhp1222 rplO rpsE TRUE 0.975 18.000 0.148 0.038 Y NA
 28076 28077 jhp1222 jhp1223 rpsE rplR TRUE 0.994 -3.000 0.814 0.038 Y NA
 28077 28078 jhp1223 jhp1224 rplR rplF TRUE 0.993 14.000 0.815 0.030 Y NA
 28078 28079 jhp1224 jhp1225 rplF rpsH TRUE 0.995 12.000 0.808 0.030 Y NA
 28079 28080 jhp1225 jhp1226 rpsH rpsN TRUE 0.995 10.000 0.473 0.030 Y NA
 28080 28081 jhp1226 jhp1227 rpsN rplE TRUE 0.995 10.000 0.496 0.030 Y NA
 28081 28082 jhp1227 jhp1228 rplE rplX TRUE 0.993 14.000 0.758 0.030 Y NA
 28082 28083 jhp1228 jhp1229 rplX rplN TRUE 0.994 0.000 0.810 0.038 Y NA
 28083 28084 jhp1229 jhp1230 rplN rpsQ TRUE 0.994 3.000 0.791 0.038 Y NA
 28084 28085 jhp1230 jhp1231 rpsQ rpmC TRUE 0.993 14.000 0.828 0.030 Y NA
 28085 28086 jhp1231 jhp1232 rpmC rplP TRUE 0.994 -13.000 0.802 0.030 Y NA
 28086 28087 jhp1232 jhp1233 rplP rpsC TRUE 0.994 3.000 0.828 0.038 Y NA
 28087 28088 jhp1233 jhp1234 rpsC rplV TRUE 0.994 4.000 0.719 0.038 Y NA
 28088 28089 jhp1234 jhp1235 rplV rpsS TRUE 0.996 10.000 0.769 0.038 Y NA
 28089 28090 jhp1235 jhp1236 rpsS rplB TRUE 0.995 12.000 0.820 0.038 Y NA
 28090 28091 jhp1236 jhp1237 rplB rplW TRUE 0.992 16.000 0.849 0.023 Y NA
 28091 28092 jhp1237 jhp1238 rplW rplD TRUE 0.994 4.000 0.513 0.030 Y NA
 28092 28093 jhp1238 jhp1239 rplD rplC TRUE 0.960 35.000 0.361 0.030 Y NA
 28093 28094 jhp1239 jhp1240 rplC rpsJ TRUE 0.960 37.000 0.467 0.038 Y NA
 28095 28096 jhp1241 jhp1242     FALSE 0.015 265.000 0.000 NA   NA
 28097 28098 jhp1243 jhp1244 rnhB   TRUE 0.714 16.000 0.007 NA   NA
 28098 28099 jhp1244 jhp1245   fumC FALSE 0.292 81.000 0.010 NA   NA
 28100 28101 jhp1246 jhp1247     TRUE 0.976 5.000 0.625 NA   NA
 28101 28102 jhp1247 jhp1248   czcB_2 TRUE 0.980 -3.000 0.562 NA Y NA
 28102 28103 jhp1248 jhp1249 czcB_2 czcA_2 TRUE 0.968 1.000 0.526 NA N NA
 28104 28105 jhp1250 jhp1251     TRUE 0.985 -6.000 0.915 NA Y NA
 28105 28106 jhp1251 jhp1252   dnaJ_2 TRUE 0.927 11.000 0.014 1.000 N NA
 28110 28111 jhp1256 jhp1257     TRUE 0.900 -16.000 0.014 1.000 N NA
 28112 28113 jhp1258 jhp1259 exbB_2 exbD_2 TRUE 0.995 -3.000 0.815 0.036 Y NA
 28113 28114 jhp1259 jhp1260 exbD_2 tonB_2 TRUE 0.985 -34.000 0.407 0.070 N NA
 28114 28115 jhp1260 jhp1261 tonB_2   FALSE 0.257 185.000 0.273 NA   NA
 28116 28117 jhp1262 jhp1263   corA TRUE 0.977 7.000 0.134 1.000 Y NA
 28117 28118 jhp1263 jhp1264 corA pgk TRUE 0.849 16.000 0.011 1.000 N NA
 28118 28119 jhp1264 jhp1265 pgk gap_2 TRUE 0.976 15.000 0.020 0.005 Y NA
 28119 28120 jhp1265 jhp1266 gap_2 ung TRUE 0.584 89.000 0.088 1.000 N NA
 28120 28121 jhp1266 jhp1267 ung plsC TRUE 0.958 -3.000 0.088 1.000 N NA
 28121 28122 jhp1267 jhp1268 plsC   TRUE 0.974 -13.000 0.846 NA   NA
 28122 28123 jhp1268 jhp1269   prc TRUE 0.903 7.000 0.017 NA   NA
 28123 28124 jhp1269 jhp1270 prc   FALSE 0.022 210.000 0.000 NA   NA
 28124 28125 jhp1270 jhp1271     TRUE 0.912 0.000 0.042 NA   NA
 28125 28126 jhp1271 jhp1272     FALSE 0.315 129.000 0.000 0.013   NA
 28126 28127 jhp1272 jhp1273   nadC FALSE 0.013 3309.000 0.002 1.000   NA
 28127 28128 jhp1273 jhp1274 nadC nadA TRUE 0.992 0.000 0.198 0.003 Y NA
 28128 28129 jhp1274 jhp1275 nadA psd TRUE 0.916 -10.000 0.018 1.000 N NA
 28129 28130 jhp1275 jhp1276 psd   TRUE 0.948 -6.000 0.079 1.000   NA
 28130 28131 jhp1276 jhp1277     TRUE 0.972 13.000 0.727 NA   NA
 28131 28132 jhp1277 jhp1278   ubiA TRUE 0.886 -64.000 0.038 NA   NA
 28132 28133 jhp1278 jhp1279 ubiA comEC TRUE 0.534 29.000 0.009 NA   NA
 28133 28134 jhp1279 jhp1280 comEC dnaB FALSE 0.373 81.000 0.023 NA   NA
 28134 28135 jhp1280 jhp1281 dnaB   TRUE 0.889 11.000 0.010 NA N NA
 28135 28136 jhp1281 jhp1282     TRUE 0.863 3.000 0.010 NA N NA
 28136 28137 jhp1282 jhp1283     TRUE 0.656 134.000 0.769 1.000 Y NA
 28138 28139 jhp1284 jhp1285     TRUE 0.978 10.000 0.037 0.056   NA
 28140 28141 jhp1286 jhp1287   mreB TRUE 0.982 4.000 0.689 1.000 N NA
 28141 28142 jhp1287 jhp1288 mreB clpX TRUE 0.809 53.000 0.034 0.094 N NA
 28142 28143 jhp1288 jhp1289 clpX lpxA TRUE 0.919 2.000 0.027 1.000 N NA
 28143 28144 jhp1289 jhp1290 lpxA fabZ TRUE 0.968 3.000 0.264 1.000 N NA
 28144 28145 jhp1290 jhp1291 fabZ   FALSE 0.103 182.000 0.017 NA   NA
 28146 28147 jhp1292 jhp1293   lon TRUE 0.730 43.000 0.062 1.000   NA
 28147 28148 jhp1293 jhp1294 lon tyrA TRUE 0.928 9.000 0.011 1.000 N NA
 28149 28150 jhp1295 jhp1296   mod_1 FALSE 0.163 261.000 0.130 1.000 N NA
 28150 28151 jhp1296 jhp1297 mod_1 res_1 TRUE 0.983 -6.000 0.200 0.056   NA
 28152 28153 jhp1298 jhp1299 bioB rbn TRUE 0.903 0.000 0.017 1.000   NA
 1937537 1937538 jhpr4 jhpr5     FALSE 0.018 231.000 0.000 NA   NA
 28154 28155 jhp1300 jhp1301     TRUE 0.601 -55.000 0.000 NA   NA
 28155 28156 jhp1301 jhp1302     FALSE 0.274 182.000 0.286 NA   NA
 28156 28157 jhp1302 jhp1303     TRUE 0.850 46.000 0.714 NA   NA
 28157 28158 jhp1303 jhp1304     TRUE 0.749 68.000 0.571 NA   NA
 28158 28159 jhp1304 jhp1305     FALSE 0.028 187.000 0.000 NA   NA
 28159 28160 jhp1305 jhp1306     FALSE 0.052 134.000 0.000 NA   NA
 28160 28161 jhp1306 jhp1307     FALSE 0.289 35.000 0.000 NA   NA
 28163 28164 jhp1309 jhp1310   miaA FALSE 0.304 71.000 0.009 NA   NA
 28164 28165 jhp1310 jhp1311 miaA   TRUE 0.915 1.000 0.021 1.000 N NA
 28165 28166 jhp1311 jhp1312     TRUE 0.638 17.000 0.000 1.000   NA
 28167 28168 jhp1313 jhp1314 murB fliQ TRUE 0.956 4.000 0.066 1.000 N NA
 28168 28169 jhp1314 jhp1315 fliQ fliI TRUE 0.976 11.000 0.145 1.000 Y NA
 28169 28170 jhp1315 jhp1316 fliI virB11_2 TRUE 0.986 1.000 0.216 0.093 Y NA
 28170 28171 jhp1316 jhp1317 virB11_2 ileS TRUE 0.971 17.000 0.242 0.093 N NA
 28171 28172 jhp1317 jhp1318 ileS   TRUE 0.854 20.000 0.013 1.000 Y NA
 28174 28175 jhp1320 jhp1321     FALSE 0.014 272.000 0.000 NA   NA
 28176 28177 jhp1322 jhp1323 ksgA   TRUE 0.615 51.000 0.028 1.000   NA
 28177 28178 jhp1323 jhp1324     TRUE 0.957 -16.000 0.222 1.000   NA
 28178 28179 jhp1324 jhp1325     TRUE 0.882 -3.000 0.009 1.000   NA
 28180 28181 jhp1326 jhp1327   purU FALSE 0.333 109.000 0.024 1.000   NA
 28181 28182 jhp1327 jhp1328 purU sppA TRUE 0.929 3.000 0.028 1.000 N NA
 28183 28184 jhp1329 jhp1330     FALSE 0.023 207.000 0.000 NA   NA
 28184 28185 jhp1330 jhp1331     FALSE 0.395 136.000 0.308 NA   NA
 28185 28186 jhp1331 jhp1332     TRUE 0.966 10.000 0.222 NA   NA
 1937539 28187 jhpr6 jhp1333     FALSE 0.006 496.000 0.000 NA   NA
 28188 28189 jhp1334 jhp1335 ppiA csrA TRUE 0.898 18.000 0.060 1.000 N NA
 28189 28190 jhp1335 jhp1336 csrA   TRUE 0.942 -3.000 0.036 1.000 N NA
 28190 28191 jhp1336 jhp1337     TRUE 0.920 -22.000 0.028 1.000 N NA
 28191 28192 jhp1337 jhp1338   exbB_3 TRUE 0.908 3.000 0.014 1.000 N NA
 28192 28193 jhp1338 jhp1339 exbB_3 exbD_3 TRUE 0.993 11.000 0.452 0.035 Y NA
 28193 28194 jhp1339 jhp1340 exbD_3 rpmH FALSE 0.328 72.000 0.005 1.000   NA
 28194 28195 jhp1340 jhp1341 rpmH rnpA TRUE 0.974 -40.000 0.787 1.000   NA
 28195 28196 jhp1341 jhp1342 rnpA   TRUE 0.966 -13.000 0.540 NA   NA
 28196 28197 jhp1342 jhp1343     TRUE 0.973 6.000 0.461 NA   NA
 28197 28198 jhp1343 jhp1344     TRUE 0.912 14.000 0.061 NA   NA
 28198 28199 jhp1344 jhp1345   thdF TRUE 0.897 -40.000 0.049 NA   NA
 28199 28200 jhp1345 jhp1346 thdF   FALSE 0.024 202.000 0.000 NA   NA
 28201 28202 jhp1347 jhp1348     TRUE 0.984 10.000 0.889 NA   NA
 28202 28203 jhp1348 jhp1349   lpp20 TRUE 0.984 8.000 1.000 NA   NA
 28203 28204 jhp1349 jhp1350 lpp20   TRUE 0.790 24.000 0.063 NA   NA
 28204 28205 jhp1350 jhp1351     FALSE 0.010 359.000 0.000 NA   NA
 28205 28206 jhp1351 jhp1352     TRUE 0.767 56.000 0.206 1.000 N NA
 28206 28207 jhp1352 jhp1353   dnaE TRUE 0.886 -18.000 0.010 1.000 N NA
 28209 28210 jhp1355 jhp1356     FALSE 0.474 19.000 0.000 NA   NA
 28210 28211 jhp1356 jhp1357     TRUE 0.940 3.000 0.120 NA   NA
 28211 28212 jhp1357 jhp1358     TRUE 0.982 -15.000 0.912 NA Y NA
 28212 28213 jhp1358 jhp1359     TRUE 0.984 0.000 0.912 NA Y NA
 28215 28216 jhp1361 jhp1362 ilvE   TRUE 0.626 51.000 0.060 NA   NA
 28216 28217 jhp1362 jhp1363   polA FALSE 0.159 114.000 0.008 NA   NA
 28217 28218 jhp1363 jhp1364 polA   TRUE 0.622 64.000 0.005 0.055   NA
 28218 28219 jhp1364 jhp1365     TRUE 0.984 -3.000 0.235 0.055   NA
 28219 28220 jhp1365 jhp1366     TRUE 0.763 32.000 0.091 NA   NA
 28220 28221 jhp1366 jhp1367   tmk TRUE 0.856 -12.000 0.014 NA   NA
 28221 28222 jhp1367 jhp1368 tmk kdtB TRUE 0.944 4.000 0.034 1.000 N NA
 28222 28223 jhp1368 jhp1369 kdtB ubiD TRUE 0.950 0.000 0.032 1.000 Y NA
 28223 28224 jhp1369 jhp1370 ubiD   TRUE 0.968 10.000 0.191 NA N NA
 28224 28225 jhp1370 jhp1371   rep TRUE 0.926 -3.000 0.036 NA N NA
 28225 28226 jhp1371 jhp1372 rep   TRUE 0.902 0.000 0.017 1.000   NA
 28226 28227 jhp1372 jhp1373   serS TRUE 0.929 10.000 0.016 1.000   NA
 28227 28228 jhp1373 jhp1374 serS   TRUE 0.870 1.000 0.010 1.000   NA
 28228 28229 jhp1374 jhp1375     TRUE 0.934 4.000 0.032 1.000   NA
 28229 28230 jhp1375 jhp1376   ubiE TRUE 0.915 10.000 0.008 1.000 N NA
 28230 28231 jhp1376 jhp1377 ubiE   TRUE 0.874 9.000 0.009 NA   NA
 28231 28232 jhp1377 jhp1378     TRUE 0.920 10.000 0.024 NA   NA
 28232 28233 jhp1378 jhp1379     TRUE 0.882 -13.000 0.024 NA   NA
 28233 28234 jhp1379 jhp1380     TRUE 0.975 -3.000 0.743 NA   NA
 28234 28235 jhp1380 jhp1381     TRUE 0.975 12.000 0.729 NA   NA
 28235 28236 jhp1381 jhp1382     TRUE 0.978 12.000 0.464 1.000 N NA
 28236 28237 jhp1382 jhp1383     TRUE 0.950 -3.000 0.082 1.000   NA
 28237 28238 jhp1383 jhp1384     FALSE 0.371 130.000 0.099 1.000   NA
 28239 28240 jhp1385 jhp1386     TRUE 0.951 13.000 0.107 1.000   NA
 28240 28241 jhp1386 jhp1387   murE TRUE 0.946 4.000 0.057 1.000   NA
 28241 28242 jhp1387 jhp1388 murE tal TRUE 0.964 3.000 0.016 0.042 N NA
 28242 28243 jhp1388 jhp1389 tal rplY TRUE 0.568 55.000 0.017 1.000 N NA
 28243 28244 jhp1389 jhp1390 rplY pth TRUE 0.994 10.000 0.496 0.043 Y NA
 28244 28245 jhp1390 jhp1391 pth   TRUE 0.977 10.000 0.031 0.043   NA
 28245 28246 jhp1391 jhp1392     FALSE 0.177 121.000 0.005 1.000   NA
 28246 28247 jhp1392 jhp1393     FALSE 0.038 167.000 0.000 NA   NA
 28250 28251 jhp1396 jhp1397 fixI   TRUE 0.938 10.000 0.023 1.000   NA
 28251 28252 jhp1397 jhp1398   ribD TRUE 0.827 -18.000 0.005 1.000   NA
 28252 28253 jhp1398 jhp1399 ribD gltS TRUE 0.826 4.000 0.000 1.000 N NA
 28256 28257 jhp1402 jhp1403   folB TRUE 0.953 -3.000 0.096 1.000   NA
 28257 28258 jhp1403 jhp1404 folB   TRUE 0.907 -16.000 0.049 NA   NA
 28258 28259 jhp1404 jhp1405   frpB_3 FALSE 0.465 169.000 1.000 NA   NA
 28259 28260 jhp1405 jhp1406 frpB_3 selA FALSE 0.032 226.000 0.000 1.000   NA
 28260 28261 jhp1406 jhp1407 selA nusA FALSE 0.297 96.000 0.007 1.000 N NA
 28261 28262 jhp1407 jhp1408 nusA   FALSE 0.292 57.000 0.003 NA   NA
 28263 28264 jhp1409 jhp1410   res_2 TRUE 0.813 122.000 0.500 0.054 Y NA
 28264 28265 jhp1410 jhp1411 res_2 mod_2 TRUE 0.988 3.000 0.429 0.054 N NA
 28265 28266 jhp1411 jhp1412 mod_2 recG TRUE 0.893 52.000 0.087 0.054 Y NA
 28267 28268 jhp1413 jhp1414     TRUE 0.981 4.000 1.000 NA   NA
 28270 28271 jhp1416 jhp1417   dnaA FALSE 0.020 221.000 0.000 NA   NA
 28272 28273 jhp1418 jhp1419     TRUE 0.625 45.000 0.039 NA   NA
 28273 28274 jhp1419 jhp1420   glmS TRUE 0.941 1.000 0.167 NA   NA
 28274 28275 jhp1420 jhp1421 glmS   TRUE 0.777 24.000 0.018 1.000 N NA
 28276 28277 jhp1422 jhp1423 hsdS_3a hsdM_3 TRUE 0.981 -3.000 0.037 0.054 Y NA
 28278 28279 jhp1424 jhp1425 hsdR_3   TRUE 0.963 0.000 0.411 NA   NA
 28280 28281 jhp1426 jhp1427 fecA_3 rocF FALSE 0.013 530.000 0.000 1.000 N NA
 28282 28283 jhp1428 jhp1429 ald   FALSE 0.028 248.000 0.000 1.000   NA
 28283 28284 jhp1429 jhp1430     FALSE 0.054 133.000 0.000 NA   NA
 28284 28285 jhp1430 jhp1431     FALSE 0.298 33.000 0.000 NA   NA
 28287 28288 jhp1433 jhp1434   recN TRUE 0.783 38.000 0.066 1.000 N NA
 28288 28289 jhp1434 jhp1435 recN   TRUE 0.905 3.000 0.035 NA   NA
 28289 28290 jhp1435 jhp1436     TRUE 0.669 19.000 0.008 NA   NA
 28290 28291 jhp1436 jhp1437     FALSE 0.042 154.000 0.000 NA   NA
 28292 28293 jhp1438 jhp1439   rpe TRUE 0.960 -130.000 0.279 1.000 N NA
 28294 28295 jhp1440 jhp1441 fbp   TRUE 0.974 0.000 0.778 NA   NA
 28295 28296 jhp1441 jhp1442     FALSE 0.159 67.000 0.000 NA   NA
 28296 28297 jhp1442 jhp1443     TRUE 0.641 87.000 0.231 1.000   NA
 28298 28299 jhp1444 jhp1445 tfs rpsB TRUE 0.985 0.000 0.748 1.000 Y NA
 28300 28301 jhp1446 jhp1447 pcrA nhaA TRUE 0.799 24.000 0.026 1.000 N NA
 28301 28302 jhp1447 jhp1448 nhaA   FALSE 0.484 48.000 0.009 NA N NA
 28302 28303 jhp1448 jhp1449   secD TRUE 0.946 1.000 0.068 NA Y NA
 28303 28304 jhp1449 jhp1450 secD secF TRUE 0.996 9.000 0.436 0.001 Y NA
 28304 28305 jhp1450 jhp1451 secF   TRUE 0.980 10.000 0.667 NA   NA
 28305 28306 jhp1451 jhp1452   leuS TRUE 0.916 10.000 0.021 NA   NA
 28306 28307 jhp1452 jhp1453 leuS   TRUE 0.908 -3.000 0.031 NA   NA
 28307 28308 jhp1453 jhp1454   folC TRUE 0.931 -10.000 0.084 NA   NA
 28308 28309 jhp1454 jhp1455 folC   TRUE 0.951 0.000 0.071 1.000 N NA
 28309 28310 jhp1455 jhp1456     TRUE 0.997 10.000 0.909 0.007 Y NA
 28310 28311 jhp1456 jhp1457     TRUE 0.960 -81.000 0.244 NA Y NA
 28311 28312 jhp1457 jhp1458   mfd TRUE 0.915 4.000 0.023 NA N NA
 28312 28313 jhp1458 jhp1459 mfd petA FALSE 0.219 125.000 0.008 1.000 N NA
 28313 28314 jhp1459 jhp1460 petA petB TRUE 0.992 11.000 0.093 0.002 Y NA
 28314 28315 jhp1460 jhp1461 petB petC TRUE 0.991 -3.000 0.103 0.002 Y NA
 28316 28317 jhp1462 jhp1463     TRUE 0.952 0.000 0.222 NA   NA
 28317 28318 jhp1463 jhp1464     FALSE 0.011 330.000 0.000 NA   NA
 28318 28319 jhp1464 jhp1465   fliE FALSE 0.430 156.000 0.303 1.000 N NA
 28319 28320 jhp1465 jhp1466 fliE flgC TRUE 0.804 128.000 0.271 0.006 Y NA
 28320 28321 jhp1466 jhp1467 flgC flgB TRUE 0.995 13.000 0.804 0.006 Y NA
 28323 28324 jhp1469 jhp1470     TRUE 0.670 208.000 0.375 0.001 Y NA
 28325 28326 jhp1471 jhp1472 tsaA   FALSE 0.166 146.000 0.016 NA N NA
 28327 28328 jhp1473 jhp1474     TRUE 0.882 -19.000 0.027 NA   NA
 28328 28329 jhp1474 jhp1475     TRUE 0.881 10.000 0.010 NA   NA
 28329 28330 jhp1475 jhp1476     TRUE 0.917 -3.000 0.041 NA   NA
 28330 28331 jhp1476 jhp1477     TRUE 0.909 0.000 0.038 NA   NA
 28331 28332 jhp1477 jhp1478     TRUE 0.960 -25.000 0.471 NA   NA
 28332 28333 jhp1478 jhp1479     TRUE 0.918 -3.000 0.042 NA   NA
 28333 28334 jhp1479 jhp1480   dniR TRUE 0.939 0.000 0.115 NA   NA
 28334 28335 jhp1480 jhp1481 dniR   FALSE 0.384 84.000 0.028 NA   NA
 28336 28337 jhp1482 jhp1483 ribC flhB_2 TRUE 0.858 1.000 0.009 1.000   NA
 28337 28338 jhp1483 jhp1484 flhB_2   TRUE 0.883 19.000 0.066 1.000   NA
 28338 28339 jhp1484 jhp1485     TRUE 0.972 2.000 0.274 1.000 Y NA
 28340 28341 jhp1486 jhp1487     TRUE 0.980 10.000 0.700 NA   NA
 28341 28342 jhp1487 jhp1488   wecA TRUE 0.977 0.000 0.538 1.000 N NA
 28343 28344 jhp1489 jhp1490 pdxJ pdxA TRUE 0.986 2.000 0.048 0.001 Y NA
 28344 28345 jhp1490 jhp1491 pdxA ydiE FALSE 0.037 350.000 0.007 1.000 N NA
 28345 28346 jhp1491 jhp1492 ydiE flgG_2 FALSE 0.016 878.000 0.004 1.000 N NA
 28347 28348 jhp1493 jhp1494     FALSE 0.005 831.000 0.000 NA   NA
 28348 28349 jhp1494 jhp1495     FALSE 0.009 366.000 0.000 NA   NA
 28349 26859 jhp1495 jhp0001   nusB FALSE 0.054 296.000 0.027 NA   NA